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P57628

- RNR_BUCAI

UniProt

P57628 - RNR_BUCAI

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Protein

Ribonuclease R

Gene
rnr, BU565
Organism
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs By similarity.UniRule annotation

Catalytic activityi

Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotation

GO - Molecular functioni

  1. exoribonuclease II activity Source: UniProtKB-HAMAP
  2. RNA binding Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Exonuclease, Hydrolase, Nuclease

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

BioCyciBAPH107806:GBZJ-565-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease R (EC:3.1.13.1)
Short name:
RNase R
Alternative name(s):
VacB protein homolog
Gene namesi
Name:rnr
Ordered Locus Names:BU565
OrganismiBuchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
Taxonomic identifieri107806 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
ProteomesiUP000001806: Chromosome

Subcellular locationi

Cytoplasm Reviewed prediction UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 731731Ribonuclease RUniRule annotationPRO_0000166397Add
BLAST

Proteomic databases

PRIDEiP57628.

Interactioni

Subunit structurei

Monomer By similarity.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliP57628.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini647 – 72882S1 motifAdd
BLAST

Sequence similaritiesi

Contains 1 S1 motif domain.

Phylogenomic databases

eggNOGiCOG0557.
HOGENOMiHOG000071120.
KOiK12573.
OMAiGFFVRLN.
OrthoDBiEOG6Q5NRD.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
HAMAPiMF_01895. RNase_R.
InterProiIPR011129. Cold_shock_prot.
IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. RNA-binding_domain_S1.
IPR013223. RNase_B_OB_dom.
IPR022966. RNase_II/R_CS.
IPR004476. RNase_II/RNase_R.
IPR011805. RNase_R.
[Graphical view]
PfamiPF08206. OB_RNB. 1 hit.
PF00575. S1. 1 hit.
[Graphical view]
SMARTiSM00357. CSP. 1 hit.
SM00316. S1. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 4 hits.
TIGRFAMsiTIGR00358. 3_prime_RNase. 1 hit.
TIGR02063. RNase_R. 1 hit.
PROSITEiPS01175. RIBONUCLEASE_II. 1 hit.
PS50126. S1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P57628-1 [UniParc]FASTAAdd to Basket

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MVVDPYQKRE AKRYKNPIPS REYISSCLRT SQDLISQKNL EKKFGINNQE    50
SKKALRRRLR AMERDGQVIY TSNRCYVAPE SLKIVKGKVI GHRDGYGFLR 100
TETLKEDLWL SSEQMKSCIH GDIILAHIVE THGKRRSSAR FLKLLQPNNI 150
LIVGRYYIDD KIKFVIPDDT RFNFKIFIFS AIKDDISIGS IVSVKLKQHP 200
IRNSRVQGFI VEILGKEMGT NLAIEIALRT HLIPSLWSKE VKKQVYEISR 250
KINQYDFKNR TDLRHFPFFT IDDEDARDFD DAVFCKRKAN PEEGWILWVA 300
IADVSCYVQP NTPLDKAALE RGTSVYFPSL VIPMLPEKIS TDLCSLKPNV 350
ERLCLICEMS LSKQGELISY KHYEGIICSH GRFTYNEIFK IWNGDIFLRS 400
KYKKFLKDIE NLSCLQNIFN KDNISKKGIY FENIEPKFVL DSNLRIKSIY 450
QNIRNDAHKF IESCMILANV ASARFVEKYK YPVLFRNHDR PKKDNVVSLR 500
LFLNELGFTL LGGDSPESVH YSNLLKNVSD RPEYEMIQTV LLRSMTQAVY 550
SPDNRGHFGL SLSSYVHFTS PIRRYPDLIL HRVIKYLLFK DKNTSKSNYN 600
FYSAHLYSTG EIKKIGAHCS ITERRADEAN RDVIDWLKCD FMYKKIGCIL 650
NGVISNVTTF GFFVRLNQFF IDGLVHINSL NDDYYYFDSL GLKLIGKSTK 700
NTYCLGDALK VKVISVNLNE KKIELSLYKS S 731
Length:731
Mass (Da):84,807
Last modified:November 15, 2002 - v2
Checksum:i1AED36ACF09CCC2A
GO

Sequence cautioni

The sequence BAB13255.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000003 Genomic DNA. Translation: BAB13255.1. Different initiation.
RefSeqiNP_240369.1. NC_002528.1.

Genome annotation databases

EnsemblBacteriaiBAB13255; BAB13255; BAB13255.
GeneIDi1109905.
KEGGibuc:BU565.
PATRICi21244674. VBIBucAph127364_0568.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000003 Genomic DNA. Translation: BAB13255.1 . Different initiation.
RefSeqi NP_240369.1. NC_002528.1.

3D structure databases

ProteinModelPortali P57628.
ModBasei Search...
MobiDBi Search...

Proteomic databases

PRIDEi P57628.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAB13255 ; BAB13255 ; BAB13255 .
GeneIDi 1109905.
KEGGi buc:BU565.
PATRICi 21244674. VBIBucAph127364_0568.

Phylogenomic databases

eggNOGi COG0557.
HOGENOMi HOG000071120.
KOi K12573.
OMAi GFFVRLN.
OrthoDBi EOG6Q5NRD.

Enzyme and pathway databases

BioCyci BAPH107806:GBZJ-565-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
HAMAPi MF_01895. RNase_R.
InterProi IPR011129. Cold_shock_prot.
IPR012340. NA-bd_OB-fold.
IPR003029. Rbsml_prot_S1_RNA-bd_dom.
IPR022967. RNA-binding_domain_S1.
IPR013223. RNase_B_OB_dom.
IPR022966. RNase_II/R_CS.
IPR004476. RNase_II/RNase_R.
IPR011805. RNase_R.
[Graphical view ]
Pfami PF08206. OB_RNB. 1 hit.
PF00575. S1. 1 hit.
[Graphical view ]
SMARTi SM00357. CSP. 1 hit.
SM00316. S1. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 4 hits.
TIGRFAMsi TIGR00358. 3_prime_RNase. 1 hit.
TIGR02063. RNase_R. 1 hit.
PROSITEi PS01175. RIBONUCLEASE_II. 1 hit.
PS50126. S1. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS."
    Shigenobu S., Watanabe H., Hattori M., Sakaki Y., Ishikawa H.
    Nature 407:81-86(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: APS.

Entry informationi

Entry nameiRNR_BUCAI
AccessioniPrimary (citable) accession number: P57628
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: November 15, 2002
Last modified: May 14, 2014
This is version 82 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Buchnera aphidicola (subsp. Acyrthosiphon pisum)
    Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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