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P57628

- RNR_BUCAI

UniProt

P57628 - RNR_BUCAI

Protein

Ribonuclease R

Gene

rnr

Organism
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
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    • History
      Entry version 83 (01 Oct 2014)
      Sequence version 2 (15 Nov 2002)
      Previous versions | rss
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    Functioni

    3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.UniRule annotation

    Catalytic activityi

    Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.UniRule annotation

    GO - Molecular functioni

    1. exoribonuclease II activity Source: UniProtKB-HAMAP
    2. RNA binding Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Exonuclease, Hydrolase, Nuclease

    Keywords - Ligandi

    RNA-binding

    Enzyme and pathway databases

    BioCyciBAPH107806:GBZJ-565-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribonuclease RUniRule annotation (EC:3.1.13.1UniRule annotation)
    Short name:
    RNase RUniRule annotation
    Alternative name(s):
    VacB protein homolog
    Gene namesi
    Name:rnrUniRule annotation
    Ordered Locus Names:BU565
    OrganismiBuchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
    Taxonomic identifieri107806 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
    ProteomesiUP000001806: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 731731Ribonuclease RPRO_0000166397Add
    BLAST

    Proteomic databases

    PRIDEiP57628.

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Structurei

    3D structure databases

    ProteinModelPortaliP57628.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini647 – 72882S1 motifUniRule annotationAdd
    BLAST

    Sequence similaritiesi

    Belongs to the RNR ribonuclease family. RNase R subfamily.UniRule annotation
    Contains 1 S1 motif domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0557.
    HOGENOMiHOG000071120.
    KOiK12573.
    OMAiGFFVRLN.
    OrthoDBiEOG6Q5NRD.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    HAMAPiMF_01895. RNase_R.
    InterProiIPR011129. Cold_shock_prot.
    IPR012340. NA-bd_OB-fold.
    IPR003029. Rbsml_prot_S1_RNA-bd_dom.
    IPR022967. RNA-binding_domain_S1.
    IPR013223. RNase_B_OB_dom.
    IPR022966. RNase_II/R_CS.
    IPR004476. RNase_II/RNase_R.
    IPR011805. RNase_R.
    [Graphical view]
    PfamiPF08206. OB_RNB. 1 hit.
    PF00575. S1. 1 hit.
    [Graphical view]
    SMARTiSM00357. CSP. 1 hit.
    SM00316. S1. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 4 hits.
    TIGRFAMsiTIGR00358. 3_prime_RNase. 1 hit.
    TIGR02063. RNase_R. 1 hit.
    PROSITEiPS01175. RIBONUCLEASE_II. 1 hit.
    PS50126. S1. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P57628-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVVDPYQKRE AKRYKNPIPS REYISSCLRT SQDLISQKNL EKKFGINNQE    50
    SKKALRRRLR AMERDGQVIY TSNRCYVAPE SLKIVKGKVI GHRDGYGFLR 100
    TETLKEDLWL SSEQMKSCIH GDIILAHIVE THGKRRSSAR FLKLLQPNNI 150
    LIVGRYYIDD KIKFVIPDDT RFNFKIFIFS AIKDDISIGS IVSVKLKQHP 200
    IRNSRVQGFI VEILGKEMGT NLAIEIALRT HLIPSLWSKE VKKQVYEISR 250
    KINQYDFKNR TDLRHFPFFT IDDEDARDFD DAVFCKRKAN PEEGWILWVA 300
    IADVSCYVQP NTPLDKAALE RGTSVYFPSL VIPMLPEKIS TDLCSLKPNV 350
    ERLCLICEMS LSKQGELISY KHYEGIICSH GRFTYNEIFK IWNGDIFLRS 400
    KYKKFLKDIE NLSCLQNIFN KDNISKKGIY FENIEPKFVL DSNLRIKSIY 450
    QNIRNDAHKF IESCMILANV ASARFVEKYK YPVLFRNHDR PKKDNVVSLR 500
    LFLNELGFTL LGGDSPESVH YSNLLKNVSD RPEYEMIQTV LLRSMTQAVY 550
    SPDNRGHFGL SLSSYVHFTS PIRRYPDLIL HRVIKYLLFK DKNTSKSNYN 600
    FYSAHLYSTG EIKKIGAHCS ITERRADEAN RDVIDWLKCD FMYKKIGCIL 650
    NGVISNVTTF GFFVRLNQFF IDGLVHINSL NDDYYYFDSL GLKLIGKSTK 700
    NTYCLGDALK VKVISVNLNE KKIELSLYKS S 731
    Length:731
    Mass (Da):84,807
    Last modified:November 15, 2002 - v2
    Checksum:i1AED36ACF09CCC2A
    GO

    Sequence cautioni

    The sequence BAB13255.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000003 Genomic DNA. Translation: BAB13255.1. Different initiation.
    RefSeqiNP_240369.1. NC_002528.1.

    Genome annotation databases

    EnsemblBacteriaiBAB13255; BAB13255; BAB13255.
    GeneIDi1109905.
    KEGGibuc:BU565.
    PATRICi21244674. VBIBucAph127364_0568.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000003 Genomic DNA. Translation: BAB13255.1 . Different initiation.
    RefSeqi NP_240369.1. NC_002528.1.

    3D structure databases

    ProteinModelPortali P57628.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi P57628.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAB13255 ; BAB13255 ; BAB13255 .
    GeneIDi 1109905.
    KEGGi buc:BU565.
    PATRICi 21244674. VBIBucAph127364_0568.

    Phylogenomic databases

    eggNOGi COG0557.
    HOGENOMi HOG000071120.
    KOi K12573.
    OMAi GFFVRLN.
    OrthoDBi EOG6Q5NRD.

    Enzyme and pathway databases

    BioCyci BAPH107806:GBZJ-565-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    HAMAPi MF_01895. RNase_R.
    InterProi IPR011129. Cold_shock_prot.
    IPR012340. NA-bd_OB-fold.
    IPR003029. Rbsml_prot_S1_RNA-bd_dom.
    IPR022967. RNA-binding_domain_S1.
    IPR013223. RNase_B_OB_dom.
    IPR022966. RNase_II/R_CS.
    IPR004476. RNase_II/RNase_R.
    IPR011805. RNase_R.
    [Graphical view ]
    Pfami PF08206. OB_RNB. 1 hit.
    PF00575. S1. 1 hit.
    [Graphical view ]
    SMARTi SM00357. CSP. 1 hit.
    SM00316. S1. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 4 hits.
    TIGRFAMsi TIGR00358. 3_prime_RNase. 1 hit.
    TIGR02063. RNase_R. 1 hit.
    PROSITEi PS01175. RIBONUCLEASE_II. 1 hit.
    PS50126. S1. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS."
      Shigenobu S., Watanabe H., Hattori M., Sakaki Y., Ishikawa H.
      Nature 407:81-86(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: APS.

    Entry informationi

    Entry nameiRNR_BUCAI
    AccessioniPrimary (citable) accession number: P57628
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 1, 2000
    Last sequence update: November 15, 2002
    Last modified: October 1, 2014
    This is version 83 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Buchnera aphidicola (subsp. Acyrthosiphon pisum)
      Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3