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P57589

- RL23_BUCAI

UniProt

P57589 - RL23_BUCAI

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Protein

50S ribosomal protein L23

Gene

rplW

Organism
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.UniRule annotation

GO - Molecular functioni

  1. nucleotide binding Source: InterPro
  2. rRNA binding Source: UniProtKB-HAMAP
  3. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciBAPH107806:GBZJ-522-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L23UniRule annotation
Gene namesi
Name:rplWUniRule annotation
Ordered Locus Names:BU522
OrganismiBuchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
Taxonomic identifieri107806 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
ProteomesiUP000001806: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 10010050S ribosomal protein L23PRO_0000129400Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliP57589.
SMRiP57589. Positions 1-97.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L23P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0089.
HOGENOMiHOG000231364.
KOiK02892.
OMAiLWISIPE.
OrthoDBiEOG6HTP4P.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
HAMAPiMF_01369_B. Ribosomal_L23_B.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view]
PfamiPF00276. Ribosomal_L23. 1 hit.
[Graphical view]
SUPFAMiSSF54189. SSF54189. 1 hit.

Sequencei

Sequence statusi: Complete.

P57589-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MISEERLLKI LLSPHVSEKT SISMEKFNTV VLKVLNNATK YEIKYAVKKI
60 70 80 90 100
FDVDVDSIKT LKVKGKKKRQ SNRIIQRSHW KKAYIKVKKG CNLDFIGNTE
Length:100
Mass (Da):11,624
Last modified:December 1, 2000 - v1
Checksum:iCDD705F1407F50C2
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000003 Genomic DNA. Translation: BAB13215.1.
RefSeqiNP_240329.1. NC_002528.1.

Genome annotation databases

EnsemblBacteriaiBAB13215; BAB13215; BAB13215.
GeneIDi1109865.
KEGGibuc:BU522.
PATRICi21244586. VBIBucAph127364_0527.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000003 Genomic DNA. Translation: BAB13215.1 .
RefSeqi NP_240329.1. NC_002528.1.

3D structure databases

ProteinModelPortali P57589.
SMRi P57589. Positions 1-97.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAB13215 ; BAB13215 ; BAB13215 .
GeneIDi 1109865.
KEGGi buc:BU522.
PATRICi 21244586. VBIBucAph127364_0527.

Phylogenomic databases

eggNOGi COG0089.
HOGENOMi HOG000231364.
KOi K02892.
OMAi LWISIPE.
OrthoDBi EOG6HTP4P.

Enzyme and pathway databases

BioCyci BAPH107806:GBZJ-522-MONOMER.

Family and domain databases

Gene3Di 3.30.70.330. 1 hit.
HAMAPi MF_01369_B. Ribosomal_L23_B.
InterProi IPR012677. Nucleotide-bd_a/b_plait.
IPR012678. Ribosomal_L23/L15e_core_dom.
IPR013025. Ribosomal_L25/23.
[Graphical view ]
Pfami PF00276. Ribosomal_L23. 1 hit.
[Graphical view ]
SUPFAMi SSF54189. SSF54189. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS."
    Shigenobu S., Watanabe H., Hattori M., Sakaki Y., Ishikawa H.
    Nature 407:81-86(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: APS.

Entry informationi

Entry nameiRL23_BUCAI
AccessioniPrimary (citable) accession number: P57589
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: December 1, 2000
Last modified: October 1, 2014
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Buchnera aphidicola (subsp. Acyrthosiphon pisum)
    Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3