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Protein

50S ribosomal protein L29

Gene

rpmC

Organism
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L29
Gene namesi
Name:rpmC
Ordered Locus Names:BU516
OrganismiBuchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
Taxonomic identifieri107806 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesErwiniaceaeBuchnera
Proteomesi
  • UP000001806 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001303631 – 6550S ribosomal protein L29Add BLAST65

Interactioni

Protein-protein interaction databases

STRINGi107806.BU516.

Structurei

3D structure databases

ProteinModelPortaliP57583.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L29P family.Curated

Phylogenomic databases

eggNOGiENOG41083MP. Bacteria.
COG0255. LUCA.
HOGENOMiHOG000248754.
KOiK02904.
OMAiFREQFNL.

Family and domain databases

CDDicd00427. Ribosomal_L29_HIP. 1 hit.
Gene3Di1.10.287.310. 1 hit.
HAMAPiMF_00374. Ribosomal_L29. 1 hit.
InterProiIPR001854. Ribosomal_L29.
IPR018254. Ribosomal_L29_CS.
[Graphical view]
PfamiPF00831. Ribosomal_L29. 1 hit.
[Graphical view]
SUPFAMiSSF46561. SSF46561. 1 hit.
TIGRFAMsiTIGR00012. L29. 1 hit.
PROSITEiPS00579. RIBOSOMAL_L29. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P57583-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKALVEFRKK NKKDLYTELL QLLREQFNLR MQSVSGKLKQ PHLLRKVRRN
60
IAQVKTLLDS KEEIK
Length:65
Mass (Da):7,821
Last modified:December 1, 2000 - v1
Checksum:iE4EB0BA88A31A758
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000003 Genomic DNA. Translation: BAB13209.1.
RefSeqiNP_240323.1. NC_002528.1.
WP_010896146.1. NC_002528.1.

Genome annotation databases

EnsemblBacteriaiBAB13209; BAB13209; BAB13209.
GeneIDi1109859.
KEGGibuc:BU516.
PATRICi21244574. VBIBucAph127364_0521.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000003 Genomic DNA. Translation: BAB13209.1.
RefSeqiNP_240323.1. NC_002528.1.
WP_010896146.1. NC_002528.1.

3D structure databases

ProteinModelPortaliP57583.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi107806.BU516.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAB13209; BAB13209; BAB13209.
GeneIDi1109859.
KEGGibuc:BU516.
PATRICi21244574. VBIBucAph127364_0521.

Phylogenomic databases

eggNOGiENOG41083MP. Bacteria.
COG0255. LUCA.
HOGENOMiHOG000248754.
KOiK02904.
OMAiFREQFNL.

Family and domain databases

CDDicd00427. Ribosomal_L29_HIP. 1 hit.
Gene3Di1.10.287.310. 1 hit.
HAMAPiMF_00374. Ribosomal_L29. 1 hit.
InterProiIPR001854. Ribosomal_L29.
IPR018254. Ribosomal_L29_CS.
[Graphical view]
PfamiPF00831. Ribosomal_L29. 1 hit.
[Graphical view]
SUPFAMiSSF46561. SSF46561. 1 hit.
TIGRFAMsiTIGR00012. L29. 1 hit.
PROSITEiPS00579. RIBOSOMAL_L29. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiRL29_BUCAI
AccessioniPrimary (citable) accession number: P57583
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: December 1, 2000
Last modified: November 2, 2016
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Buchnera aphidicola (subsp. Acyrthosiphon pisum)
    Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.