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P57575 (RL18_BUCAI) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 80. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (4) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein attributes

Sequence length122 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance By similarity. HAMAP-Rule MF_01337

Subunit structure

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S and 23S rRNAs By similarity.

Sequence similarities

Belongs to the ribosomal protein L18P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical term3D-structure
Complete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 12212250S ribosomal protein L18 HAMAP-Rule MF_01337
PRO_0000131231

Secondary structure

.................. 122
Helix Strand Turn

Details...

Sequences

Sequence LengthMass (Da)Tools
P57575 [UniParc].

Last modified December 1, 2000. Version 1.
Checksum: 82914291E8B1AE35

FASTA12213,806
        10         20         30         40         50         60 
MIFSNKNKII SRIRRSMKTR CKIKKLGAIR LVVHRTSRHM YAQIISSKEA KVLVFASTLE 

        70         80         90        100        110        120 
RKINCSLKYT GNKEAAAKIG KIIAERALSK GISHVSFDRS GFKYHGRVQV LAESAREVGL 


KF 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS."
Shigenobu S., Watanabe H., Hattori M., Sakaki Y., Ishikawa H.
Nature 407:81-86(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: APS.
[2]"Structure of homology model of 50S ribosomal protein L18."
Prakash N.R., Diwan A.H.M.
Submitted (MAR-2003) to the PDB data bank
Cited for: 3D-STRUCTURE MODELING.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000003 Genomic DNA. Translation: BAB13201.1.
RefSeqNP_240315.1. NC_002528.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1OQ8model-A1-122[»]
ProteinModelPortalP57575.
SMRP57575. Positions 22-122.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAB13201; BAB13201; BAB13201.
GeneID1109851.
KEGGbuc:BU508.
PATRIC21244558. VBIBucAph127364_0513.

Phylogenomic databases

eggNOGCOG0256.
HOGENOMHOG000248742.
KOK02881.
OMARAAKTRH.
OrthoDBEOG64NB48.
ProtClustDBPRK05593.

Enzyme and pathway databases

BioCycBAPH107806:GBZJ-508-MONOMER.

Family and domain databases

HAMAPMF_01337_B. Ribosomal_L18_B.
InterProIPR005484. Ribosomal_L18/L5.
IPR004389. Ribosomal_L18_bac-type.
[Graphical view]
PfamPF00861. Ribosomal_L18p. 1 hit.
[Graphical view]
TIGRFAMsTIGR00060. L18_bact. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRL18_BUCAI
AccessionPrimary (citable) accession number: P57575
Entry history
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: December 1, 2000
Last modified: February 19, 2014
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Buchnera aphidicola (subsp. Acyrthosiphon pisum)

Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names