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Protein

Ribosome maturation factor RimM

Gene

rimM

Organism
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Chaperone

Keywords - Biological processi

Ribosome biogenesis

Enzyme and pathway databases

BioCyciBAPH107806:GBZJ-395-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribosome maturation factor RimMUniRule annotation
Gene namesi
Name:rimMUniRule annotation
Ordered Locus Names:BU395
OrganismiBuchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
Taxonomic identifieri107806 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
ProteomesiUP000001806 Componenti: Chromosome

Subcellular locationi

  • Cytoplasm UniRule annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 176176Ribosome maturation factor RimMPRO_0000163266Add
BLAST

Interactioni

Subunit structurei

Binds ribosomal protein S19.UniRule annotation

Protein-protein interaction databases

STRINGi107806.BU395.

Structurei

3D structure databases

ProteinModelPortaliP57475.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini102 – 17574PRC barrelUniRule annotationAdd
BLAST

Domaini

The PRC barrel domain binds ribosomal protein S19.UniRule annotation

Sequence similaritiesi

Belongs to the RimM family.UniRule annotation
Contains 1 PRC barrel domain.UniRule annotation

Phylogenomic databases

eggNOGiCOG0806.
HOGENOMiHOG000220989.
KOiK02860.
OMAiILGWINI.
OrthoDBiEOG6SBT2K.

Family and domain databases

Gene3Di2.40.30.60. 1 hit.
HAMAPiMF_00014. Ribosome_mat_RimM.
InterProiIPR011961. 16S_RimM.
IPR027275. PRC-brl_dom.
IPR011033. PRC_barrel-like.
IPR002676. RimM.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamiPF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]
SUPFAMiSSF50346. SSF50346. 1 hit.
SSF50447. SSF50447. 1 hit.
TIGRFAMsiTIGR02273. 16S_RimM. 1 hit.

Sequencei

Sequence statusi: Complete.

P57475-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MINISINKPI QPLLIGKVGK SYGILGWINI FSFTEEQEKI FNYLPWFFFK
60 70 80 90 100
EKNWTRIQIK NWKKYKNNFI VHIKDISDRS VVSQFTNADI IISKHTLPAL
110 120 130 140 150
KKNDYYWNDI INYKVFNIDQ HYLGTVINLI RTRNNDILIV KNKLKIHQKN
160 170
ILIPFIDNKI IKNVNTDKKF ILVQWD
Length:176
Mass (Da):21,098
Last modified:December 1, 2000 - v1
Checksum:i59571EE7A8C486BC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000003 Genomic DNA. Translation: BAB13098.1.
RefSeqiNP_240212.1. NC_002528.1.
WP_010896097.1. NC_002528.1.

Genome annotation databases

EnsemblBacteriaiBAB13098; BAB13098; BAB13098.
GeneIDi1109748.
KEGGibuc:BU395.
PATRICi21244330. VBIBucAph127364_0409.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000003 Genomic DNA. Translation: BAB13098.1.
RefSeqiNP_240212.1. NC_002528.1.
WP_010896097.1. NC_002528.1.

3D structure databases

ProteinModelPortaliP57475.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi107806.BU395.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAB13098; BAB13098; BAB13098.
GeneIDi1109748.
KEGGibuc:BU395.
PATRICi21244330. VBIBucAph127364_0409.

Phylogenomic databases

eggNOGiCOG0806.
HOGENOMiHOG000220989.
KOiK02860.
OMAiILGWINI.
OrthoDBiEOG6SBT2K.

Enzyme and pathway databases

BioCyciBAPH107806:GBZJ-395-MONOMER.

Family and domain databases

Gene3Di2.40.30.60. 1 hit.
HAMAPiMF_00014. Ribosome_mat_RimM.
InterProiIPR011961. 16S_RimM.
IPR027275. PRC-brl_dom.
IPR011033. PRC_barrel-like.
IPR002676. RimM.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamiPF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]
SUPFAMiSSF50346. SSF50346. 1 hit.
SSF50447. SSF50447. 1 hit.
TIGRFAMsiTIGR02273. 16S_RimM. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS."
    Shigenobu S., Watanabe H., Hattori M., Sakaki Y., Ishikawa H.
    Nature 407:81-86(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: APS.

Entry informationi

Entry nameiRIMM_BUCAI
AccessioniPrimary (citable) accession number: P57475
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: December 1, 2000
Last modified: June 24, 2015
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Buchnera aphidicola (subsp. Acyrthosiphon pisum)
    Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.