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P57475 (RIMM_BUCAI) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 75. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Ribosome maturation factor RimM
Gene names
Name:rimM
Ordered Locus Names:BU395
OrganismBuchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium) [Reference proteome] [HAMAP]
Taxonomic identifier107806 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera

Protein attributes

Sequence length176 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes By similarity. HAMAP-Rule MF_00014

Subunit structure

Binds ribosomal protein S19 By similarity. HAMAP-Rule MF_00014

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00014.

Domain

The PRC barrel domain binds ribosomal protein S19 By similarity. HAMAP-Rule MF_00014

Sequence similarities

Belongs to the RimM family.

Contains 1 PRC barrel domain.

Ontologies

Keywords
   Biological processRibosome biogenesis
   Cellular componentCytoplasm
   Molecular functionChaperone
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processrRNA processing

Inferred from electronic annotation. Source: InterPro

ribosomal small subunit biogenesis

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: InterPro

   Molecular_functionribosome binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 176176Ribosome maturation factor RimM HAMAP-Rule MF_00014
PRO_0000163266

Regions

Domain102 – 17574PRC barrel

Sequences

Sequence LengthMass (Da)Tools
P57475 [UniParc].

Last modified December 1, 2000. Version 1.
Checksum: 59571EE7A8C486BC

FASTA17621,098
        10         20         30         40         50         60 
MINISINKPI QPLLIGKVGK SYGILGWINI FSFTEEQEKI FNYLPWFFFK EKNWTRIQIK 

        70         80         90        100        110        120 
NWKKYKNNFI VHIKDISDRS VVSQFTNADI IISKHTLPAL KKNDYYWNDI INYKVFNIDQ 

       130        140        150        160        170 
HYLGTVINLI RTRNNDILIV KNKLKIHQKN ILIPFIDNKI IKNVNTDKKF ILVQWD 

« Hide

References

[1]"Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS."
Shigenobu S., Watanabe H., Hattori M., Sakaki Y., Ishikawa H.
Nature 407:81-86(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: APS.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000003 Genomic DNA. Translation: BAB13098.1.
RefSeqNP_240212.1. NC_002528.1.

3D structure databases

ProteinModelPortalP57475.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAB13098; BAB13098; BAB13098.
GeneID1109748.
KEGGbuc:BU395.
PATRIC21244330. VBIBucAph127364_0409.

Phylogenomic databases

eggNOGCOG0806.
HOGENOMHOG000220989.
KOK02860.
OMAYGIKGWL.
OrthoDBEOG6SBT2K.
ProtClustDBPRK00122.

Enzyme and pathway databases

BioCycBAPH107806:GBZJ-395-MONOMER.

Family and domain databases

Gene3D2.40.30.60. 1 hit.
HAMAPMF_00014. Ribosome_mat_RimM.
InterProIPR011961. 16S_RimM.
IPR027275. PRC-brl_dom.
IPR011033. PRC_barrel-like.
IPR002676. RimM.
IPR009000. Transl_B-barrel.
[Graphical view]
PfamPF05239. PRC. 1 hit.
PF01782. RimM. 1 hit.
[Graphical view]
SUPFAMSSF50346. SSF50346. 1 hit.
SSF50447. SSF50447. 1 hit.
TIGRFAMsTIGR02273. 16S_RimM. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRIMM_BUCAI
AccessionPrimary (citable) accession number: P57475
Entry history
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: December 1, 2000
Last modified: February 19, 2014
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Buchnera aphidicola (subsp. Acyrthosiphon pisum)

Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names