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P57475

- RIMM_BUCAI

UniProt

P57475 - RIMM_BUCAI

Protein

Ribosome maturation factor RimM

Gene

rimM

Organism
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 78 (01 Oct 2014)
      Sequence version 1 (01 Dec 2000)
      Previous versions | rss
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    Functioni

    An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes.UniRule annotation

    GO - Molecular functioni

    1. ribosome binding Source: InterPro

    GO - Biological processi

    1. ribosomal small subunit biogenesis Source: UniProtKB-HAMAP
    2. rRNA processing Source: InterPro

    Keywords - Molecular functioni

    Chaperone

    Keywords - Biological processi

    Ribosome biogenesis

    Enzyme and pathway databases

    BioCyciBAPH107806:GBZJ-395-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribosome maturation factor RimMUniRule annotation
    Gene namesi
    Name:rimMUniRule annotation
    Ordered Locus Names:BU395
    OrganismiBuchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
    Taxonomic identifieri107806 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
    ProteomesiUP000001806: Chromosome

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. ribosome Source: InterPro

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 176176Ribosome maturation factor RimMPRO_0000163266Add
    BLAST

    Interactioni

    Subunit structurei

    Binds ribosomal protein S19.UniRule annotation

    Structurei

    3D structure databases

    ProteinModelPortaliP57475.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini102 – 17574PRC barrelUniRule annotationAdd
    BLAST

    Domaini

    The PRC barrel domain binds ribosomal protein S19.UniRule annotation

    Sequence similaritiesi

    Belongs to the RimM family.UniRule annotation
    Contains 1 PRC barrel domain.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0806.
    HOGENOMiHOG000220989.
    KOiK02860.
    OMAiIKGWLKV.
    OrthoDBiEOG6SBT2K.

    Family and domain databases

    Gene3Di2.40.30.60. 1 hit.
    HAMAPiMF_00014. Ribosome_mat_RimM.
    InterProiIPR011961. 16S_RimM.
    IPR027275. PRC-brl_dom.
    IPR011033. PRC_barrel-like.
    IPR002676. RimM.
    IPR009000. Transl_B-barrel.
    [Graphical view]
    PfamiPF05239. PRC. 1 hit.
    PF01782. RimM. 1 hit.
    [Graphical view]
    SUPFAMiSSF50346. SSF50346. 1 hit.
    SSF50447. SSF50447. 1 hit.
    TIGRFAMsiTIGR02273. 16S_RimM. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P57475-1 [UniParc]FASTAAdd to Basket

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    MINISINKPI QPLLIGKVGK SYGILGWINI FSFTEEQEKI FNYLPWFFFK    50
    EKNWTRIQIK NWKKYKNNFI VHIKDISDRS VVSQFTNADI IISKHTLPAL 100
    KKNDYYWNDI INYKVFNIDQ HYLGTVINLI RTRNNDILIV KNKLKIHQKN 150
    ILIPFIDNKI IKNVNTDKKF ILVQWD 176
    Length:176
    Mass (Da):21,098
    Last modified:December 1, 2000 - v1
    Checksum:i59571EE7A8C486BC
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000003 Genomic DNA. Translation: BAB13098.1.
    RefSeqiNP_240212.1. NC_002528.1.
    WP_010896097.1. NC_002528.1.

    Genome annotation databases

    EnsemblBacteriaiBAB13098; BAB13098; BAB13098.
    GeneIDi1109748.
    KEGGibuc:BU395.
    PATRICi21244330. VBIBucAph127364_0409.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000003 Genomic DNA. Translation: BAB13098.1 .
    RefSeqi NP_240212.1. NC_002528.1.
    WP_010896097.1. NC_002528.1.

    3D structure databases

    ProteinModelPortali P57475.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAB13098 ; BAB13098 ; BAB13098 .
    GeneIDi 1109748.
    KEGGi buc:BU395.
    PATRICi 21244330. VBIBucAph127364_0409.

    Phylogenomic databases

    eggNOGi COG0806.
    HOGENOMi HOG000220989.
    KOi K02860.
    OMAi IKGWLKV.
    OrthoDBi EOG6SBT2K.

    Enzyme and pathway databases

    BioCyci BAPH107806:GBZJ-395-MONOMER.

    Family and domain databases

    Gene3Di 2.40.30.60. 1 hit.
    HAMAPi MF_00014. Ribosome_mat_RimM.
    InterProi IPR011961. 16S_RimM.
    IPR027275. PRC-brl_dom.
    IPR011033. PRC_barrel-like.
    IPR002676. RimM.
    IPR009000. Transl_B-barrel.
    [Graphical view ]
    Pfami PF05239. PRC. 1 hit.
    PF01782. RimM. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50346. SSF50346. 1 hit.
    SSF50447. SSF50447. 1 hit.
    TIGRFAMsi TIGR02273. 16S_RimM. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS."
      Shigenobu S., Watanabe H., Hattori M., Sakaki Y., Ishikawa H.
      Nature 407:81-86(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: APS.

    Entry informationi

    Entry nameiRIMM_BUCAI
    AccessioniPrimary (citable) accession number: P57475
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 1, 2000
    Last sequence update: December 1, 2000
    Last modified: October 1, 2014
    This is version 78 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Buchnera aphidicola (subsp. Acyrthosiphon pisum)
      Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3