Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

P57238 (RL25_BUCAI) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 68. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein attributes

Sequence length95 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance By similarity. HAMAP-Rule MF_01336

Subunit structure

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18 By similarity.

Sequence similarities

Belongs to the ribosomal protein L25P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_function5S rRNA binding

Inferred from electronic annotation. Source: InterPro

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 959550S ribosomal protein L25 HAMAP-Rule MF_01336
PRO_0000181473

Sequences

Sequence LengthMass (Da)Tools
P57238 [UniParc].

Last modified December 1, 2000. Version 1.
Checksum: C234CE06D0F7A84C

FASTA9511,336
        10         20         30         40         50         60 
MLTLQAETRK EKGTGFSRRL RIHNKFPAVL YGVKKTEILL ILDHNTTFNL QKKIEFYKEN 

        70         80         90 
LLLCVQDKKY KVKVQAIQRH SFKSKLLHID FLYVE 

« Hide

References

[1]"Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS."
Shigenobu S., Watanabe H., Hattori M., Sakaki Y., Ishikawa H.
Nature 407:81-86(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: APS.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000003 Genomic DNA. Translation: BAB12856.1.
RefSeqNP_239970.1. NC_002528.1.

3D structure databases

ProteinModelPortalP57238.
SMRP57238. Positions 1-93.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAB12856; BAB12856; BAB12856.
GeneID1109582.
KEGGbuc:BU138.
PATRIC21243790. VBIBucAph127364_0147.

Phylogenomic databases

eggNOGCOG1825.
HOGENOMHOG000277629.
KOK02897.
OMASIELDHD.
OrthoDBEOG6SZ1PC.
ProtClustDBPRK05943.

Enzyme and pathway databases

BioCycBAPH107806:GBZJ-138-MONOMER.

Family and domain databases

Gene3D2.40.240.10. 1 hit.
HAMAPMF_01336. Ribosomal_L25.
InterProIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020055. Ribosomal_L25_short.
[Graphical view]
PfamPF01386. Ribosomal_L25p. 1 hit.
[Graphical view]
ProDomPD012503. Ribosomal_L25. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50715. SSF50715. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRL25_BUCAI
AccessionPrimary (citable) accession number: P57238
Entry history
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: December 1, 2000
Last modified: February 19, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

Buchnera aphidicola (subsp. Acyrthosiphon pisum)

Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names