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P57238

- RL25_BUCAI

UniProt

P57238 - RL25_BUCAI

Protein

50S ribosomal protein L25

Gene

rplY

Organism
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.UniRule annotation

    GO - Molecular functioni

    1. 5S rRNA binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciBAPH107806:GBZJ-138-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L25UniRule annotation
    Gene namesi
    Name:rplYUniRule annotation
    Ordered Locus Names:BU138
    OrganismiBuchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
    Taxonomic identifieri107806 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
    ProteomesiUP000001806: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 959550S ribosomal protein L25PRO_0000181473Add
    BLAST

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.UniRule annotation

    Structurei

    3D structure databases

    ProteinModelPortaliP57238.
    SMRiP57238. Positions 1-93.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L25P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1825.
    HOGENOMiHOG000277629.
    KOiK02897.
    OMAiGNTYERI.
    OrthoDBiEOG6SZ1PC.

    Family and domain databases

    Gene3Di2.40.240.10. 1 hit.
    HAMAPiMF_01336. Ribosomal_L25.
    InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
    IPR011035. Ribosomal_L25/Gln-tRNA_synth.
    IPR020055. Ribosomal_L25_short.
    [Graphical view]
    SUPFAMiSSF50715. SSF50715. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P57238-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLTLQAETRK EKGTGFSRRL RIHNKFPAVL YGVKKTEILL ILDHNTTFNL   50
    QKKIEFYKEN LLLCVQDKKY KVKVQAIQRH SFKSKLLHID FLYVE 95
    Length:95
    Mass (Da):11,336
    Last modified:December 1, 2000 - v1
    Checksum:iC234CE06D0F7A84C
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000003 Genomic DNA. Translation: BAB12856.1.
    RefSeqiNP_239970.1. NC_002528.1.

    Genome annotation databases

    EnsemblBacteriaiBAB12856; BAB12856; BAB12856.
    GeneIDi1109582.
    KEGGibuc:BU138.
    PATRICi21243790. VBIBucAph127364_0147.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000003 Genomic DNA. Translation: BAB12856.1 .
    RefSeqi NP_239970.1. NC_002528.1.

    3D structure databases

    ProteinModelPortali P57238.
    SMRi P57238. Positions 1-93.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAB12856 ; BAB12856 ; BAB12856 .
    GeneIDi 1109582.
    KEGGi buc:BU138.
    PATRICi 21243790. VBIBucAph127364_0147.

    Phylogenomic databases

    eggNOGi COG1825.
    HOGENOMi HOG000277629.
    KOi K02897.
    OMAi GNTYERI.
    OrthoDBi EOG6SZ1PC.

    Enzyme and pathway databases

    BioCyci BAPH107806:GBZJ-138-MONOMER.

    Family and domain databases

    Gene3Di 2.40.240.10. 1 hit.
    HAMAPi MF_01336. Ribosomal_L25.
    InterProi IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
    IPR011035. Ribosomal_L25/Gln-tRNA_synth.
    IPR020055. Ribosomal_L25_short.
    [Graphical view ]
    SUPFAMi SSF50715. SSF50715. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS."
      Shigenobu S., Watanabe H., Hattori M., Sakaki Y., Ishikawa H.
      Nature 407:81-86(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: APS.

    Entry informationi

    Entry nameiRL25_BUCAI
    AccessioniPrimary (citable) accession number: P57238
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 1, 2000
    Last sequence update: December 1, 2000
    Last modified: October 1, 2014
    This is version 71 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Buchnera aphidicola (subsp. Acyrthosiphon pisum)
      Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3