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P57238

- RL25_BUCAI

UniProt

P57238 - RL25_BUCAI

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Protein
50S ribosomal protein L25
Gene
rplY, BU138
Organism
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance By similarity.UniRule annotation

GO - Molecular functioni

  1. 5S rRNA binding Source: InterPro
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciBAPH107806:GBZJ-138-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L25
Gene namesi
Name:rplY
Ordered Locus Names:BU138
OrganismiBuchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
Taxonomic identifieri107806 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
ProteomesiUP000001806: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 959550S ribosomal protein L25UniRule annotation
PRO_0000181473Add
BLAST

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18 By similarity.

Structurei

3D structure databases

ProteinModelPortaliP57238.
SMRiP57238. Positions 1-93.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG1825.
HOGENOMiHOG000277629.
KOiK02897.
OMAiGNTYERI.
OrthoDBiEOG6SZ1PC.

Family and domain databases

Gene3Di2.40.240.10. 1 hit.
HAMAPiMF_01336. Ribosomal_L25.
InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020055. Ribosomal_L25_short.
[Graphical view]
SUPFAMiSSF50715. SSF50715. 1 hit.

Sequencei

Sequence statusi: Complete.

P57238-1 [UniParc]FASTAAdd to Basket

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MLTLQAETRK EKGTGFSRRL RIHNKFPAVL YGVKKTEILL ILDHNTTFNL   50
QKKIEFYKEN LLLCVQDKKY KVKVQAIQRH SFKSKLLHID FLYVE 95
Length:95
Mass (Da):11,336
Last modified:December 1, 2000 - v1
Checksum:iC234CE06D0F7A84C
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000003 Genomic DNA. Translation: BAB12856.1.
RefSeqiNP_239970.1. NC_002528.1.

Genome annotation databases

EnsemblBacteriaiBAB12856; BAB12856; BAB12856.
GeneIDi1109582.
KEGGibuc:BU138.
PATRICi21243790. VBIBucAph127364_0147.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
BA000003 Genomic DNA. Translation: BAB12856.1 .
RefSeqi NP_239970.1. NC_002528.1.

3D structure databases

ProteinModelPortali P57238.
SMRi P57238. Positions 1-93.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAB12856 ; BAB12856 ; BAB12856 .
GeneIDi 1109582.
KEGGi buc:BU138.
PATRICi 21243790. VBIBucAph127364_0147.

Phylogenomic databases

eggNOGi COG1825.
HOGENOMi HOG000277629.
KOi K02897.
OMAi GNTYERI.
OrthoDBi EOG6SZ1PC.

Enzyme and pathway databases

BioCyci BAPH107806:GBZJ-138-MONOMER.

Family and domain databases

Gene3Di 2.40.240.10. 1 hit.
HAMAPi MF_01336. Ribosomal_L25.
InterProi IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020055. Ribosomal_L25_short.
[Graphical view ]
SUPFAMi SSF50715. SSF50715. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS."
    Shigenobu S., Watanabe H., Hattori M., Sakaki Y., Ishikawa H.
    Nature 407:81-86(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: APS.

Entry informationi

Entry nameiRL25_BUCAI
AccessioniPrimary (citable) accession number: P57238
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: December 1, 2000
Last modified: September 3, 2014
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Buchnera aphidicola (subsp. Acyrthosiphon pisum)
    Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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