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P57235

- SYGB_BUCAI

UniProt

P57235 - SYGB_BUCAI

Protein

Glycine--tRNA ligase beta subunit

Gene

glyS

Organism
Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 79 (01 Oct 2014)
      Sequence version 1 (01 Dec 2000)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly).

    GO - Molecular functioni

    1. arginine-tRNA ligase activity Source: InterPro
    2. ATP binding Source: UniProtKB-KW
    3. glycine-tRNA ligase activity Source: UniProtKB-EC

    GO - Biological processi

    1. arginyl-tRNA aminoacylation Source: InterPro
    2. glycyl-tRNA aminoacylation Source: InterPro

    Keywords - Molecular functioni

    Aminoacyl-tRNA synthetase, Ligase

    Keywords - Biological processi

    Protein biosynthesis

    Keywords - Ligandi

    ATP-binding, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciBAPH107806:GBZJ-135-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Glycine--tRNA ligase beta subunit (EC:6.1.1.14)
    Alternative name(s):
    Glycyl-tRNA synthetase beta subunit
    Short name:
    GlyRS
    Gene namesi
    Name:glyS
    Ordered Locus Names:BU135
    OrganismiBuchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (Acyrthosiphon pisum symbiotic bacterium)
    Taxonomic identifieri107806 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeBuchnera
    ProteomesiUP000001806: Chromosome

    Subcellular locationi

    Cytoplasm By similarity

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 690690Glycine--tRNA ligase beta subunitPRO_0000072895Add
    BLAST

    Interactioni

    Subunit structurei

    Tetramer of two alpha and two beta subunits.By similarity

    Structurei

    3D structure databases

    ProteinModelPortaliP57235.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    eggNOGiCOG0751.
    HOGENOMiHOG000264302.
    KOiK01879.
    OMAiLPIPKRM.
    OrthoDBiEOG661H9S.

    Family and domain databases

    HAMAPiMF_00255. Gly_tRNA_synth_beta.
    InterProiIPR008909. DALR_anticod-bd.
    IPR015944. Gly-tRNA-synth_bsu.
    IPR006194. Gly-tRNA-synth_heterodimer.
    [Graphical view]
    PfamiPF05746. DALR_1. 1 hit.
    PF02092. tRNA_synt_2f. 1 hit.
    [Graphical view]
    PRINTSiPR01045. TRNASYNTHGB.
    TIGRFAMsiTIGR00211. glyS. 1 hit.
    PROSITEiPS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P57235-1 [UniParc]FASTAAdd to Basket

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    MTKKILLIEI GTEELPARLL SKISLYFYKN FIKELDFHNI SYKNIKYFST    50
    PRRLALKIKD IDITERFVEI KKRGPSIINS YDKDGFLTEA ATRWLKHCGI 100
    NINQAIRLKN EKGEWLFYKT RKKQENIESL IPKITESALK NISIKKSMRW 150
    GQDNQKFSRP IRNIVILLDK KVIPGDVFNI TSKNLLQNHL SSKDSQIKIK 200
    DAKDYPKILL EKNNIIADYF IRKEKIIEDI ENIAKKIKGF IKKNNVLIEE 250
    VTALVESPKA LLVNFQEKFL QIPKKILINT IEKKQKCFPI YNSEKKLLPY 300
    FIFISNIQTQ ESEKIIIGNQ RVMHARLSDA EFFFKNDRKV KLESRLLSLK 350
    KVLFQNNLGS LYEKTLRIKL LIKWIAKYSS SDVEDSIRAA LLSKCDLVTD 400
    VVCEFPELQG KIGMYYALED KEKKDVATAL EEQYLPRFSG DKLPCTPIGC 450
    GLSIADKMDT LSGMFYIGNI PSSDKDPFAL RRLAIGIIRI ILEKNIPLNL 500
    EDLIKKSLSL YNKKNEDDLI LFDKMIKFFM IRLFHWYEET GYSAKIIKSV 550
    LSCKSIELID IHKKIQAISF FKKLKDSQSI ILSIKRISNI LAKEKEKING 600
    DINKKLMIEK EEIILFNNIE EFDNYTKNLF LEKKYNDILI KIKSFENPIY 650
    NFFKKVKIYH SDSKIRLNRL LLLSKLKKIF FKIADFSYLY 690
    Length:690
    Mass (Da):80,803
    Last modified:December 1, 2000 - v1
    Checksum:i2788D93B7B231403
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000003 Genomic DNA. Translation: BAB12853.1.
    RefSeqiNP_239967.1. NC_002528.1.

    Genome annotation databases

    EnsemblBacteriaiBAB12853; BAB12853; BAB12853.
    GeneIDi1109579.
    KEGGibuc:BU135.
    PATRICi21243784. VBIBucAph127364_0144.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000003 Genomic DNA. Translation: BAB12853.1 .
    RefSeqi NP_239967.1. NC_002528.1.

    3D structure databases

    ProteinModelPortali P57235.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAB12853 ; BAB12853 ; BAB12853 .
    GeneIDi 1109579.
    KEGGi buc:BU135.
    PATRICi 21243784. VBIBucAph127364_0144.

    Phylogenomic databases

    eggNOGi COG0751.
    HOGENOMi HOG000264302.
    KOi K01879.
    OMAi LPIPKRM.
    OrthoDBi EOG661H9S.

    Enzyme and pathway databases

    BioCyci BAPH107806:GBZJ-135-MONOMER.

    Family and domain databases

    HAMAPi MF_00255. Gly_tRNA_synth_beta.
    InterProi IPR008909. DALR_anticod-bd.
    IPR015944. Gly-tRNA-synth_bsu.
    IPR006194. Gly-tRNA-synth_heterodimer.
    [Graphical view ]
    Pfami PF05746. DALR_1. 1 hit.
    PF02092. tRNA_synt_2f. 1 hit.
    [Graphical view ]
    PRINTSi PR01045. TRNASYNTHGB.
    TIGRFAMsi TIGR00211. glyS. 1 hit.
    PROSITEi PS50861. AA_TRNA_LIGASE_II_GLYAB. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS."
      Shigenobu S., Watanabe H., Hattori M., Sakaki Y., Ishikawa H.
      Nature 407:81-86(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: APS.

    Entry informationi

    Entry nameiSYGB_BUCAI
    AccessioniPrimary (citable) accession number: P57235
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: December 1, 2000
    Last sequence update: December 1, 2000
    Last modified: October 1, 2014
    This is version 79 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Aminoacyl-tRNA synthetases
      List of aminoacyl-tRNA synthetase entries
    2. Buchnera aphidicola (subsp. Acyrthosiphon pisum)
      Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3