Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

P57216 (ETCD_BUCAI) Reviewed, UniProtKB/Swiss-Prot

Last modified March 19, 2014. Version 81. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein attributes

Sequence length347 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Part of a membrane complex involved in electron transport By similarity. HAMAP-Rule MF_00462

Subunit structure

Composed of six subunits By similarity. HAMAP-Rule MF_00462

Subcellular location

Cell inner membrane; Multi-pass membrane protein Potential HAMAP-Rule MF_00462.

Sequence similarities

Belongs to the NqrB/RnfD family.

Sequence caution

The sequence BAB12834.1 differs from that shown. Reason: Erroneous initiation.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 347347Electron transport complex subunit D HAMAP-Rule MF_00462
PRO_0000074450

Regions

Transmembrane15 – 3521Helical; Potential
Transmembrane36 – 5621Helical; Potential
Transmembrane84 – 10421Helical; Potential
Transmembrane114 – 13421Helical; Potential
Transmembrane217 – 23721Helical; Potential
Transmembrane239 – 25921Helical; Potential
Transmembrane261 – 28121Helical; Potential
Transmembrane289 – 30921Helical; Potential
Transmembrane315 – 33521Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
P57216 [UniParc].

Last modified November 15, 2002. Version 2.
Checksum: 1C6F68F2A002F9F2

FASTA34739,559
        10         20         30         40         50         60 
MNFPCIYHVY SIRKIMFLVI VACLPGIFAK YYFFGIGTLI QIFFSIFISL VLEIIILKIR 

        70         80         90        100        110        120 
SKNIKNYLQD TSLVLTSVLF GVSIPPLLPW WMTSIGLFFA IVVAKHLYGG IGQNIFNPAM 

       130        140        150        160        170        180 
VGYAVLLISF PVYMNNWNER DFSLSFFNDF KKSAYIIFFK NDITTVSSSY LNIIPDAFTT 

       190        200        210        220        230        240 
ATPLNNFKIK SHLKDDFFLK ENIIKNKEVS IQTSWKCINI SFFLGGIFLL FTKIICWRIP 

       250        260        270        280        290        300 
ISFLSSLGML SIITYFYSKE LFMSPQVHFF SGGTMICAFF IATDPVTAAC NNVGKIVFGI 

       310        320        330        340 
IIGFLVWIIR NYSDYPDAIA FSVLFANMTV PLVDYYTKSS GYGRNNI 

« Hide

References

[1]"Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS."
Shigenobu S., Watanabe H., Hattori M., Sakaki Y., Ishikawa H.
Nature 407:81-86(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: APS.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000003 Genomic DNA. Translation: BAB12834.1. Different initiation.
RefSeqNP_239948.2. NC_002528.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAB12834; BAB12834; BAB12834.
GeneID1109560.
KEGGbuc:BU116.
PATRIC21243744. VBIBucAph127364_0124.

Phylogenomic databases

eggNOGCOG4658.
HOGENOMHOG000273665.
KOK03614.
OMAYLIRTWG.
OrthoDBEOG65BDMX.
ProtClustDBCLSK315389.

Enzyme and pathway databases

BioCycBAPH107806:GBZJ-116-MONOMER.

Family and domain databases

HAMAPMF_00462. RsxD_RnfD.
InterProIPR011303. Elect_transpt_cplx_RnfD.
IPR004338. NADH_Q_Rdtase_NQR2_RnfD.
[Graphical view]
PfamPF03116. NQR2_RnfD_RnfE. 1 hit.
[Graphical view]
TIGRFAMsTIGR01946. rnfD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameETCD_BUCAI
AccessionPrimary (citable) accession number: P57216
Entry history
Integrated into UniProtKB/Swiss-Prot: October 24, 2001
Last sequence update: November 15, 2002
Last modified: March 19, 2014
This is version 81 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Buchnera aphidicola (subsp. Acyrthosiphon pisum)

Buchnera aphidicola (subsp. Acyrthosiphon pisum): entries and gene names