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P57005

- SODC_NEIMA

UniProt

P57005 - SODC_NEIMA

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Protein
Superoxide dismutase [Cu-Zn]
Gene
sodC, NMA1617
Organism
Neisseria meningitidis serogroup A / serotype 4A (strain Z2491)
Status
Reviewed - Annotation score: 3 out of 5 - Experimental evidence at protein leveli

Functioni

Destroys radicals which are normally produced within the cells and which are toxic to biological systems By similarity.

Catalytic activityi

2 superoxide + 2 H+ = O2 + H2O2.

Cofactori

Binds 1 copper ion per subunit By similarity.
Binds 1 zinc ion per subunit By similarity.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi79 – 791Copper; catalytic By similarity
Metal bindingi81 – 811Copper; catalytic By similarity
Metal bindingi104 – 1041Copper; catalytic By similarity
Metal bindingi104 – 1041Zinc; structural By similarity
Metal bindingi113 – 1131Zinc; structural By similarity
Metal bindingi122 – 1221Zinc; structural By similarity
Metal bindingi125 – 1251Zinc; structural By similarity
Metal bindingi160 – 1601Copper; catalytic By similarity

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. superoxide dismutase activity Source: UniProtKB-EC
Complete GO annotation...

Keywords - Molecular functioni

Antioxidant, Oxidoreductase

Keywords - Ligandi

Copper, Metal-binding, Zinc

Enzyme and pathway databases

BioCyciNMEN122587:GI3Q-1469-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Superoxide dismutase [Cu-Zn] (EC:1.15.1.1)
Gene namesi
Name:sodC
Ordered Locus Names:NMA1617
OrganismiNeisseria meningitidis serogroup A / serotype 4A (strain Z2491)
Taxonomic identifieri122587 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaNeisserialesNeisseriaceaeNeisseria
ProteomesiUP000000626: Chromosome

Subcellular locationi

Periplasm By similarity

GO - Cellular componenti

  1. periplasmic space Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2222 Reviewed prediction
Add
BLAST
Chaini23 – 186164Superoxide dismutase [Cu-Zn]
PRO_0000032833Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi86 ↔ 182 By similarity

Keywords - PTMi

Disulfide bond

Interactioni

Subunit structurei

Homodimer By similarity.

Protein-protein interaction databases

STRINGi122587.NMA1617.

Structurei

Secondary structure

Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi34 – 407
Turni43 – 453
Beta strandi48 – 5811
Beta strandi61 – 688
Beta strandi73 – 764
Beta strandi78 – 847
Beta strandi89 – 913
Beta strandi94 – 963
Helixi99 – 1013
Beta strandi129 – 1313
Beta strandi141 – 1433
Helixi149 – 1524
Beta strandi155 – 1628
Beta strandi166 – 1716
Helixi172 – 1754
Beta strandi178 – 1858

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2AQNX-ray1.40A/B/C23-186[»]
2AQPX-ray1.30A/B23-186[»]
2AQQX-ray1.65A/B/C23-186[»]
2AQTX-ray1.80A/B/C23-186[»]
ProteinModelPortaliP57005.
SMRiP57005. Positions 32-186.

Miscellaneous databases

EvolutionaryTraceiP57005.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG2032.
HOGENOMiHOG000263449.
KOiK04565.
OMAiMAAGGHW.
OrthoDBiEOG6K13RS.

Family and domain databases

Gene3Di2.60.40.200. 1 hit.
InterProiIPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view]
PfamiPF00080. Sod_Cu. 1 hit.
[Graphical view]
SUPFAMiSSF49329. SSF49329. 1 hit.
PROSITEiPS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P57005-1 [UniParc]FASTAAdd to Basket

« Hide

MNMKTLLALA VSAVCSVSVA QAHEHNTIPK GASIEVKVQQ LDPVNGNKDV    50
GTVTITESNY GLVFTPDLQG LSEGLHGFHI HENPSCEPKE KEGKLTAGLG 100
AGGHWDPKGA KQHGYPWQDD AHLGDLPALT VLHDGTATNP VLAPRLKHLD 150
DVRGHSIMIH TGGDNHSDHP APLGGGGPRM ACGVIK 186
Length:186
Mass (Da):19,550
Last modified:December 1, 2000 - v1
Checksum:i04C84AB87FC7522D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL157959 Genomic DNA. Translation: CAM08755.1.
PIRiE81855.
RefSeqiYP_002342924.1. NC_003116.1.

Genome annotation databases

EnsemblBacteriaiCAM08755; CAM08755; NMA1617.
GeneIDi908006.
KEGGinma:NMA1617.
PATRICi20364347. VBINeiMen132687_1877.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AL157959 Genomic DNA. Translation: CAM08755.1 .
PIRi E81855.
RefSeqi YP_002342924.1. NC_003116.1.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
2AQN X-ray 1.40 A/B/C 23-186 [» ]
2AQP X-ray 1.30 A/B 23-186 [» ]
2AQQ X-ray 1.65 A/B/C 23-186 [» ]
2AQT X-ray 1.80 A/B/C 23-186 [» ]
ProteinModelPortali P57005.
SMRi P57005. Positions 32-186.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 122587.NMA1617.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CAM08755 ; CAM08755 ; NMA1617 .
GeneIDi 908006.
KEGGi nma:NMA1617.
PATRICi 20364347. VBINeiMen132687_1877.

Phylogenomic databases

eggNOGi COG2032.
HOGENOMi HOG000263449.
KOi K04565.
OMAi MAAGGHW.
OrthoDBi EOG6K13RS.

Enzyme and pathway databases

BioCyci NMEN122587:GI3Q-1469-MONOMER.

Miscellaneous databases

EvolutionaryTracei P57005.

Family and domain databases

Gene3Di 2.60.40.200. 1 hit.
InterProi IPR018152. SOD_Cu/Zn_BS.
IPR001424. SOD_Cu_Zn_dom.
[Graphical view ]
Pfami PF00080. Sod_Cu. 1 hit.
[Graphical view ]
SUPFAMi SSF49329. SSF49329. 1 hit.
PROSITEi PS00087. SOD_CU_ZN_1. 1 hit.
PS00332. SOD_CU_ZN_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Z2491.

Entry informationi

Entry nameiSODC_NEIMA
AccessioniPrimary (citable) accession number: P57005
Secondary accession number(s): A1ISJ6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 1, 2000
Last sequence update: December 1, 2000
Last modified: July 9, 2014
This is version 104 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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