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P56890

- RBS_SINMW

UniProt

P56890 - RBS_SINMW

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Protein

Ribulose bisphosphate carboxylase small chain

Gene

cbbS

Organism
Sinorhizobium medicae (strain WSM419) (Ensifer medicae)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site (By similarity).By similarity

Catalytic activityi

2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.
3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.

GO - Molecular functioni

  1. monooxygenase activity Source: UniProtKB-KW
  2. ribulose-bisphosphate carboxylase activity Source: UniProtKB-EC

GO - Biological processi

  1. reductive pentose-phosphate cycle Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Lyase, Monooxygenase, Oxidoreductase

Keywords - Biological processi

Calvin cycle, Carbon dioxide fixation

Enzyme and pathway databases

BioCyciSMED366394:GJAL-3986-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribulose bisphosphate carboxylase small chain (EC:4.1.1.39)
Short name:
RuBisCO small subunit
Gene namesi
Name:cbbS
Ordered Locus Names:Smed_3925
Encoded oniPlasmid pSMED010 Publication
OrganismiSinorhizobium medicae (strain WSM419) (Ensifer medicae)
Taxonomic identifieri366394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001108: Plasmid pSMED01

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 129129Ribulose bisphosphate carboxylase small chainPRO_0000198620Add
BLAST

Interactioni

Subunit structurei

8 large chains + 8 small chains.

Protein-protein interaction databases

STRINGi366394.Smed_3925.

Structurei

3D structure databases

ProteinModelPortaliP56890.
SMRiP56890. Positions 1-127.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the RuBisCO small chain family.Curated

Phylogenomic databases

eggNOGiCOG4451.
HOGENOMiHOG000141331.
KOiK01602.
OMAiMEVEDCR.
OrthoDBiEOG6RC3Q7.

Family and domain databases

Gene3Di3.30.190.10. 1 hit.
InterProiIPR000894. RuBisCO_sc_dom.
[Graphical view]
PfamiPF00101. RuBisCO_small. 1 hit.
[Graphical view]
SMARTiSM00961. RuBisCO_small. 1 hit.
[Graphical view]
SUPFAMiSSF55239. SSF55239. 1 hit.

Sequencei

Sequence statusi: Complete.

P56890-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MRITQGCFSF LPDLTDEQIT AQVEYCLGRG WAIGVEYTDD PHPRNTYWEM
60 70 80 90 100
WGNPMFDLRD AKGVMMEVED CRKAHPQDYI RLNAFDSSRG LETVTMSFIV
110 120
NRPENEPSLR MTRTESDGRS QHYTWETQR
Length:129
Mass (Da):15,161
Last modified:May 30, 2000 - v1
Checksum:iD16D8DD44EC7FCDA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF211846 Genomic DNA. Translation: AAF25380.1.
CP000739 Genomic DNA. Translation: ABR62735.1.
RefSeqiYP_001312668.1. NC_009620.1.

Genome annotation databases

EnsemblBacteriaiABR62735; ABR62735; Smed_3925.
GeneIDi5318761.
KEGGismd:Smed_3925.
PATRICi23613396. VBISinMed134228_0371.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF211846 Genomic DNA. Translation: AAF25380.1 .
CP000739 Genomic DNA. Translation: ABR62735.1 .
RefSeqi YP_001312668.1. NC_009620.1.

3D structure databases

ProteinModelPortali P56890.
SMRi P56890. Positions 1-127.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 366394.Smed_3925.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ABR62735 ; ABR62735 ; Smed_3925 .
GeneIDi 5318761.
KEGGi smd:Smed_3925.
PATRICi 23613396. VBISinMed134228_0371.

Phylogenomic databases

eggNOGi COG4451.
HOGENOMi HOG000141331.
KOi K01602.
OMAi MEVEDCR.
OrthoDBi EOG6RC3Q7.

Enzyme and pathway databases

BioCyci SMED366394:GJAL-3986-MONOMER.

Family and domain databases

Gene3Di 3.30.190.10. 1 hit.
InterProi IPR000894. RuBisCO_sc_dom.
[Graphical view ]
Pfami PF00101. RuBisCO_small. 1 hit.
[Graphical view ]
SMARTi SM00961. RuBisCO_small. 1 hit.
[Graphical view ]
SUPFAMi SSF55239. SSF55239. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genetic regulation of C1 metabolism in Sinorhizobium meliloti."
    Fenner B.J., Tiwari R.P., Dilworth M.J.
    Submitted (DEC-1999) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Complete sequence of Sinorhizobium medicae WSM419 plasmid pSMED01."
    US DOE Joint Genome Institute
    Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Reeve W.G., Richardson P.
    Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: WSM419.

Entry informationi

Entry nameiRBS_SINMW
AccessioniPrimary (citable) accession number: P56890
Secondary accession number(s): A6UGF5
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 30, 2000
Last modified: October 1, 2014
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3