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P56890

- RBS_SINMW

UniProt

P56890 - RBS_SINMW

Protein

Ribulose bisphosphate carboxylase small chain

Gene

cbbS

Organism
Sinorhizobium medicae (strain WSM419) (Ensifer medicae)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
  1. Functioni

    RuBisCO catalyzes two reactions: the carboxylation of D-ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site By similarity.By similarity

    Catalytic activityi

    2 3-phospho-D-glycerate + 2 H+ = D-ribulose 1,5-bisphosphate + CO2 + H2O.
    3-phospho-D-glycerate + 2-phosphoglycolate = D-ribulose 1,5-bisphosphate + O2.

    GO - Molecular functioni

    1. monooxygenase activity Source: UniProtKB-KW
    2. ribulose-bisphosphate carboxylase activity Source: UniProtKB-EC

    GO - Biological processi

    1. reductive pentose-phosphate cycle Source: UniProtKB-KW

    Keywords - Molecular functioni

    Lyase, Monooxygenase, Oxidoreductase

    Keywords - Biological processi

    Calvin cycle, Carbon dioxide fixation

    Enzyme and pathway databases

    BioCyciSMED366394:GJAL-3986-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Ribulose bisphosphate carboxylase small chain (EC:4.1.1.39)
    Short name:
    RuBisCO small subunit
    Gene namesi
    Name:cbbS
    Ordered Locus Names:Smed_3925
    Encoded oniPlasmid pSMED010 Publication
    OrganismiSinorhizobium medicae (strain WSM419) (Ensifer medicae)
    Taxonomic identifieri366394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001108: Plasmid pSMED01

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 129129Ribulose bisphosphate carboxylase small chainPRO_0000198620Add
    BLAST

    Interactioni

    Subunit structurei

    8 large chains + 8 small chains.

    Protein-protein interaction databases

    STRINGi366394.Smed_3925.

    Structurei

    3D structure databases

    ProteinModelPortaliP56890.
    SMRiP56890. Positions 1-127.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the RuBisCO small chain family.Curated

    Phylogenomic databases

    eggNOGiCOG4451.
    HOGENOMiHOG000141331.
    KOiK01602.
    OMAiMEVEDCR.
    OrthoDBiEOG6RC3Q7.

    Family and domain databases

    Gene3Di3.30.190.10. 1 hit.
    InterProiIPR000894. RuBisCO_sc_dom.
    [Graphical view]
    PfamiPF00101. RuBisCO_small. 1 hit.
    [Graphical view]
    SMARTiSM00961. RuBisCO_small. 1 hit.
    [Graphical view]
    SUPFAMiSSF55239. SSF55239. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P56890-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRITQGCFSF LPDLTDEQIT AQVEYCLGRG WAIGVEYTDD PHPRNTYWEM    50
    WGNPMFDLRD AKGVMMEVED CRKAHPQDYI RLNAFDSSRG LETVTMSFIV 100
    NRPENEPSLR MTRTESDGRS QHYTWETQR 129
    Length:129
    Mass (Da):15,161
    Last modified:May 30, 2000 - v1
    Checksum:iD16D8DD44EC7FCDA
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF211846 Genomic DNA. Translation: AAF25380.1.
    CP000739 Genomic DNA. Translation: ABR62735.1.
    RefSeqiYP_001312668.1. NC_009620.1.

    Genome annotation databases

    EnsemblBacteriaiABR62735; ABR62735; Smed_3925.
    GeneIDi5318761.
    KEGGismd:Smed_3925.
    PATRICi23613396. VBISinMed134228_0371.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF211846 Genomic DNA. Translation: AAF25380.1 .
    CP000739 Genomic DNA. Translation: ABR62735.1 .
    RefSeqi YP_001312668.1. NC_009620.1.

    3D structure databases

    ProteinModelPortali P56890.
    SMRi P56890. Positions 1-127.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 366394.Smed_3925.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ABR62735 ; ABR62735 ; Smed_3925 .
    GeneIDi 5318761.
    KEGGi smd:Smed_3925.
    PATRICi 23613396. VBISinMed134228_0371.

    Phylogenomic databases

    eggNOGi COG4451.
    HOGENOMi HOG000141331.
    KOi K01602.
    OMAi MEVEDCR.
    OrthoDBi EOG6RC3Q7.

    Enzyme and pathway databases

    BioCyci SMED366394:GJAL-3986-MONOMER.

    Family and domain databases

    Gene3Di 3.30.190.10. 1 hit.
    InterProi IPR000894. RuBisCO_sc_dom.
    [Graphical view ]
    Pfami PF00101. RuBisCO_small. 1 hit.
    [Graphical view ]
    SMARTi SM00961. RuBisCO_small. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55239. SSF55239. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Genetic regulation of C1 metabolism in Sinorhizobium meliloti."
      Fenner B.J., Tiwari R.P., Dilworth M.J.
      Submitted (DEC-1999) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "Complete sequence of Sinorhizobium medicae WSM419 plasmid pSMED01."
      US DOE Joint Genome Institute
      Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E., Tice H., Pitluck S., Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Reeve W.G., Richardson P.
      Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: WSM419.

    Entry informationi

    Entry nameiRBS_SINMW
    AccessioniPrimary (citable) accession number: P56890
    Secondary accession number(s): A6UGF5
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 30, 2000
    Last sequence update: May 30, 2000
    Last modified: October 1, 2014
    This is version 77 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Plasmid

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3