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Protein

DNA-binding protein PYRAB09250

Gene

PYRAB09250

Organism
Pyrococcus abyssi (strain GE5 / Orsay)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

Complete GO annotation...

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA-binding protein PYRAB09250UniRule annotation
Gene namesi
Ordered Locus Names:PYRAB09250
ORF Names:PAB0620
OrganismiPyrococcus abyssi (strain GE5 / Orsay)
Taxonomic identifieri272844 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaThermococciThermococcalesThermococcaceaePyrococcus
Proteomesi
  • UP000000810 Componenti: Chromosome
  • UP000009139 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001215601 – 115DNA-binding protein PYRAB09250Add BLAST115

Interactioni

Protein-protein interaction databases

STRINGi272844.PAB0620.

Structurei

3D structure databases

ProteinModelPortaliP56813.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the PDCD5 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04179. Archaea.
COG2118. LUCA.
HOGENOMiHOG000194121.
KOiK06875.
OMAiIREPIDD.

Family and domain databases

Gene3Di1.10.8.140. 1 hit.
HAMAPiMF_00026. dsDNA_bind. 1 hit.
InterProiIPR022889. DNA_bind_arc.
IPR002836. PDCD5-related.
[Graphical view]
PANTHERiPTHR10840. PTHR10840. 1 hit.
PfamiPF01984. dsDNA_bind. 1 hit.
[Graphical view]
PIRSFiPIRSF015730. TFAR19. 1 hit.
SUPFAMiSSF46950. SSF46950. 1 hit.

Sequencei

Sequence statusi: Complete.

P56813-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MREVAEDIEE IRRRKLLELQ RKYLEQQKAQ EEEARQQALI EAQIQAILRK
60 70 80 90 100
ILTPEARERL ARVRLVRPEL ARQVELILVQ LYQAGQITER IDDAKLKKIL
110
AQIEARTRRE FRIKW
Length:115
Mass (Da):13,881
Last modified:May 30, 2000 - v1
Checksum:iEB0E82DC5155DF54
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ248285 Genomic DNA. Translation: CAB49839.1.
HE613800 Genomic DNA. Translation: CCE70333.1.
PIRiF75140.

Genome annotation databases

EnsemblBacteriaiCAB49839; CAB49839; PAB0620.
KEGGipab:PAB0620.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ248285 Genomic DNA. Translation: CAB49839.1.
HE613800 Genomic DNA. Translation: CCE70333.1.
PIRiF75140.

3D structure databases

ProteinModelPortaliP56813.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272844.PAB0620.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAB49839; CAB49839; PAB0620.
KEGGipab:PAB0620.

Phylogenomic databases

eggNOGiarCOG04179. Archaea.
COG2118. LUCA.
HOGENOMiHOG000194121.
KOiK06875.
OMAiIREPIDD.

Family and domain databases

Gene3Di1.10.8.140. 1 hit.
HAMAPiMF_00026. dsDNA_bind. 1 hit.
InterProiIPR022889. DNA_bind_arc.
IPR002836. PDCD5-related.
[Graphical view]
PANTHERiPTHR10840. PTHR10840. 1 hit.
PfamiPF01984. dsDNA_bind. 1 hit.
[Graphical view]
PIRSFiPIRSF015730. TFAR19. 1 hit.
SUPFAMiSSF46950. SSF46950. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY925_PYRAB
AccessioniPrimary (citable) accession number: P56813
Secondary accession number(s): G8ZI92
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 30, 2000
Last sequence update: May 30, 2000
Last modified: November 30, 2016
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.