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Protein

Uncharacterized protein YmdF

Gene

ymdF

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciEcoCyc:MONOMER0-2665.
ECOL316407:JW5136-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein YmdF
Gene namesi
Name:ymdF
Ordered Locus Names:b4518, JW5136
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG14358. ymdF.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 5757Uncharacterized protein YmdFPRO_0000168810Add
BLAST

Proteomic databases

PaxDbiP56614.

Interactioni

Protein-protein interaction databases

BioGridi4259547. 11 interactions.
IntActiP56614. 1 interaction.
STRINGi511145.b4518.

Structurei

3D structure databases

ProteinModelPortaliP56614.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the con-10 family.Curated

Phylogenomic databases

eggNOGiENOG4105XF5. Bacteria.
COG3729. LUCA.
HOGENOMiHOG000201826.
InParanoidiP56614.
OMAiMARDQER.
PhylomeDBiP56614.

Family and domain databases

InterProiIPR019626. Stress-induced_KGG_rpt.
[Graphical view]
PfamiPF10685. KGG. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P56614-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MANHRGGSGN FAEDRERASE AGKKGGQHSG GNFKNDPQRA SEAGKKGGKS

SHGKSDN
Length:57
Mass (Da):5,883
Last modified:December 15, 1998 - v1
Checksum:iD18133DAE91C6F5B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74090.2.
AP009048 Genomic DNA. Translation: BAA35772.2.
PIRiC64842.
RefSeqiNP_415525.2. NC_000913.3.
WP_001273658.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC74090; AAC74090; b4518.
BAA35772; BAA35772; BAA35772.
GeneIDi945598.
KEGGiecj:JW5136.
eco:b4518.
PATRICi32117235. VBIEscCol129921_1041.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC74090.2.
AP009048 Genomic DNA. Translation: BAA35772.2.
PIRiC64842.
RefSeqiNP_415525.2. NC_000913.3.
WP_001273658.1. NZ_LN832404.1.

3D structure databases

ProteinModelPortaliP56614.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4259547. 11 interactions.
IntActiP56614. 1 interaction.
STRINGi511145.b4518.

Proteomic databases

PaxDbiP56614.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC74090; AAC74090; b4518.
BAA35772; BAA35772; BAA35772.
GeneIDi945598.
KEGGiecj:JW5136.
eco:b4518.
PATRICi32117235. VBIEscCol129921_1041.

Organism-specific databases

EchoBASEiEB4104.
EcoGeneiEG14358. ymdF.

Phylogenomic databases

eggNOGiENOG4105XF5. Bacteria.
COG3729. LUCA.
HOGENOMiHOG000201826.
InParanoidiP56614.
OMAiMARDQER.
PhylomeDBiP56614.

Enzyme and pathway databases

BioCyciEcoCyc:MONOMER0-2665.
ECOL316407:JW5136-MONOMER.

Miscellaneous databases

PROiP56614.

Family and domain databases

InterProiIPR019626. Stress-induced_KGG_rpt.
[Graphical view]
PfamiPF10685. KGG. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYMDF_ECOLI
AccessioniPrimary (citable) accession number: P56614
Secondary accession number(s): Q9R302, Q9ZN60
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: December 15, 1998
Last modified: September 7, 2016
This is version 91 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.