50S ribosomal protein L11 - Bacillus stearothermophilus

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Reviewed, UniProtKB/Swiss-Prot P56210 (RL11_BACST)

Last modified February 9, 2010. Version 69. History...

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Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein names

Recommended name:
50S ribosomal protein L11

Gene names

Name:

rplK

Organism

Bacillus stearothermophilus (Geobacillus stearothermophilus)

Taxonomic identifier

Taxonomic lineage

Bacteria › Firmicutes › Bacillales › Bacillaceae › Geobacillus

Protein attributes

Sequence length	133 AA.
Sequence status	Fragment.
Protein existence	Evidence at protein level.

General annotation (Comments)

Function	This protein binds directly to 23S ribosomal RNA. HAMAP MF_00736
Post-translational modification	One or more lysine residues are methylated By similarity. HAMAP MF_00736
Sequence similarities	Belongs to the ribosomal protein L11P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
PTM	Methylation
Technical term	3D-structure Direct protein sequencing
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: HAMAP
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

›133

50S ribosomal protein L11 HAMAP MF_00736

PRO_0000104244

Experimental info

Non-terminal residue

1

Secondary structure

1

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133

Helix Strand Turn

Sequences

Sequence

Length

Mass (Da)

Tools

P56210-1 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 2F0DAC76EFD4AAE1
Show »

133

14,103

        10         20         30         40         50         60 
MKLQIPAGKA NPAPPVGPAL GQAGVNIMAF CKEFNARTAD QAGLIIPVEI TVFEDRSFTF 

        70         80         90        100        110        120 
ITKTPPAAVL LKKAAGIESG SGEPNRNKVA TIKRDKVREI AELKMPDLNA ASIEAAMRMI 

       130 
EGTARSMGIV VED

References

[1]	"Stabilization of a ribosomal RNA tertiary structure by ribosomal protein L11." Xing Y., Draper D.E. J. Mol. Biol. 249:319-331(1995) [PubMed: 7783196] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA], PARTIAL PROTEIN SEQUENCE.
[2]	"Crystal structure of a conserved ribosomal protein-RNA complex." Conn G.L., Draper D.E., Lattman E.E., Gittis A.G. Science 284:1171-1174(1999) [PubMed: 10325228] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.8 ANGSTROMS) OF 63-129.
[3]	"High resolution solution structure of ribosomal protein L11-C76, a helical protein with a flexible loop that becomes structured upon binding to RNA." Markus M.A., Hinck A.P., Huang S., Draper D.E., Torchia D.A. Nat. Struct. Biol. 4:70-77(1997) [PubMed: 8989327] [Abstract] Cited for: STRUCTURE BY NMR OF 59-133.
[4]	"Placement of protein and RNA structures into a 5 A-resolution map of the 50S ribosomal subunit." Ban N., Nissen P., Hansen J., Capel M., Moore P.B., Steitz T.A. Nature 400:841-847(1999) [PubMed: 10476961] [Abstract] Cited for: 3D-STRUCTURE MODELING OF 63-129 ONTO THE H.MARISMORTUI 50S RIBOSOME.
+	Additional computationally mapped references.

Cross-references

Sequence databases

PIR

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1ACI	NMR	-	A	59-133	[»]
1FOW	NMR	-	A	59-133	[»]
1FOX	NMR	-	A	59-133	[»]
1FOY	NMR	-	A	59-133	[»]
1HC8	X-ray	2.80	A/B	58-132	[»]
1IP8	model	-	G	-	[»]
1QA6	X-ray	2.80	A/B	63-129	[»]
1Y39	X-ray	2.80	A/B	58-133	[»]
2FOW	NMR	-	A	59-133	[»]

SMR

P56210. Positions 1-133.

DisProt

ModBase

Family and domain databases

HAMAP

MF_00736_B. Ribosomal_L11_B.
[Tree]

InterPro

IPR000911. Ribosomal_L11.
IPR006519. Ribosomal_L11_bac-type.
IPR020783. Ribosomal_L11_C.
IPR020785. Ribosomal_L11_CS.
IPR020784. Ribosomal_L11_N.
[Graphical view]

Gene3D

G3DSA:1.10.10.250. Ribosomal_L11. 1 hit.

PANTHER

PTHR11661. Ribosomal_L11. 1 hit.

Pfam

PF00298. Ribosomal_L11. 1 hit.
PF03946. Ribosomal_L11_N. 1 hit.
[Graphical view]

SMART

SM00649. RL11. 1 hit.
[Graphical view]

TIGRFAMs

TIGR01632. L11_bact. 1 hit.

PROSITE

PS00359. RIBOSOMAL_L11. 1 hit.
[Graphical view]

ProtoNet

Entry information

Entry name

RL11_BACST

Accession

Primary (citable) accession number: P56210

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	February 9, 2010
This is version 69 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

PDB cross-references

Index of Protein Data Bank (PDB) cross-references

Ribosomal proteins

Ribosomal proteins families and list of entries

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents