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P56078

- RL25_HELPY

UniProt

P56078 - RL25_HELPY

Protein

50S ribosomal protein L25

Gene

rplY

Organism
Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 86 (01 Oct 2014)
      Sequence version 1 (01 Nov 1997)
      Previous versions | rss
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    Functioni

    This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.UniRule annotation

    GO - Molecular functioni

    1. 5S rRNA binding Source: InterPro
    2. structural constituent of ribosome Source: InterPro

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding

    Enzyme and pathway databases

    BioCyciHPY:HP1496-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L25UniRule annotation
    Alternative name(s):
    General stress protein CTCUniRule annotation
    Gene namesi
    Name:rplYUniRule annotation
    Synonyms:ctcUniRule annotation
    Ordered Locus Names:HP_1496
    OrganismiHelicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
    Taxonomic identifieri85962 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
    ProteomesiUP000000429: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 17817850S ribosomal protein L25PRO_0000181554Add
    BLAST

    Proteomic databases

    PRIDEiP56078.

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.UniRule annotation

    Protein-protein interaction databases

    DIPiDIP-3750N.
    IntActiP56078. 4 interactions.
    MINTiMINT-179762.
    STRINGi85962.HP1496.

    Structurei

    3D structure databases

    ProteinModelPortaliP56078.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L25P family. CTC subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG1825.
    KOiK02897.
    OMAiYGKEREN.
    OrthoDBiEOG6SZ1PC.

    Family and domain databases

    Gene3Di2.170.120.20. 1 hit.
    2.40.240.10. 1 hit.
    HAMAPiMF_01334. Ribosomal_L25_CTC.
    InterProiIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
    IPR011035. Ribosomal_L25/Gln-tRNA_synth.
    IPR020057. Ribosomal_L25_b-dom.
    IPR001021. Ribosomal_L25_long.
    [Graphical view]
    PfamiPF14693. Ribosomal_TL5_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF50715. SSF50715. 1 hit.
    TIGRFAMsiTIGR00731. ctc_TL5. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P56078-1 [UniParc]FASTAAdd to Basket

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    MLEGVIRESI TKANAKALKK DGYLIANVYG KGIENVNGAF KLNPFIKYLK    50
    EKKHLIFPVK LGDKTFEVVV QEYQKNPVTN ELIHVDLLAV TKGVKSKFKV 100
    PIKHQGTPVG LKNKGILMLS KKRISVECAP EHLPDHYLVD VAPLDVNESI 150
    LVRDLEKHEN VKILDHDSIA VIGVIKAK 178
    Length:178
    Mass (Da):19,879
    Last modified:November 1, 1997 - v1
    Checksum:iB66E5C13A5BD0B9B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE000511 Genomic DNA. Translation: AAD08537.1.
    PIRiH64706.
    RefSeqiNP_208287.1. NC_000915.1.
    YP_006935422.1. NC_018939.1.

    Genome annotation databases

    EnsemblBacteriaiAAD08537; AAD08537; HP_1496.
    GeneIDi13870712.
    899795.
    KEGGiheo:C694_07750.
    hpy:HP1496.
    PATRICi20594403. VBIHelPyl33062_1570.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE000511 Genomic DNA. Translation: AAD08537.1 .
    PIRi H64706.
    RefSeqi NP_208287.1. NC_000915.1.
    YP_006935422.1. NC_018939.1.

    3D structure databases

    ProteinModelPortali P56078.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-3750N.
    IntActi P56078. 4 interactions.
    MINTi MINT-179762.
    STRINGi 85962.HP1496.

    Proteomic databases

    PRIDEi P56078.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAD08537 ; AAD08537 ; HP_1496 .
    GeneIDi 13870712.
    899795.
    KEGGi heo:C694_07750.
    hpy:HP1496.
    PATRICi 20594403. VBIHelPyl33062_1570.

    Phylogenomic databases

    eggNOGi COG1825.
    KOi K02897.
    OMAi YGKEREN.
    OrthoDBi EOG6SZ1PC.

    Enzyme and pathway databases

    BioCyci HPY:HP1496-MONOMER.

    Family and domain databases

    Gene3Di 2.170.120.20. 1 hit.
    2.40.240.10. 1 hit.
    HAMAPi MF_01334. Ribosomal_L25_CTC.
    InterProi IPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
    IPR011035. Ribosomal_L25/Gln-tRNA_synth.
    IPR020057. Ribosomal_L25_b-dom.
    IPR001021. Ribosomal_L25_long.
    [Graphical view ]
    Pfami PF14693. Ribosomal_TL5_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50715. SSF50715. 1 hit.
    TIGRFAMsi TIGR00731. ctc_TL5. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 700392 / 26695.

    Entry informationi

    Entry nameiRL25_HELPY
    AccessioniPrimary (citable) accession number: P56078
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 86 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Helicobacter pylori
      Helicobacter pylori (strain 26695): entries and gene names
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3