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P56078 (RL25_HELPY) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 84. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L25
Alternative name(s):
General stress protein CTC
Gene names
Name:rplY
Synonyms:ctc
Ordered Locus Names:HP_1496
OrganismHelicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori) [Reference proteome] [HAMAP]
Taxonomic identifier85962 [NCBI]
Taxonomic lineageBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter

Protein attributes

Sequence length178 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance By similarity. HAMAP-Rule MF_01334

Subunit structure

Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18 By similarity.

Sequence similarities

Belongs to the ribosomal protein L25P family. CTC subfamily.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_function5S rRNA binding

Inferred from electronic annotation. Source: InterPro

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 17817850S ribosomal protein L25 HAMAP-Rule MF_01334
PRO_0000181554

Sequences

Sequence LengthMass (Da)Tools
P56078 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: B66E5C13A5BD0B9B

FASTA17819,879
        10         20         30         40         50         60 
MLEGVIRESI TKANAKALKK DGYLIANVYG KGIENVNGAF KLNPFIKYLK EKKHLIFPVK 

        70         80         90        100        110        120 
LGDKTFEVVV QEYQKNPVTN ELIHVDLLAV TKGVKSKFKV PIKHQGTPVG LKNKGILMLS 

       130        140        150        160        170 
KKRISVECAP EHLPDHYLVD VAPLDVNESI LVRDLEKHEN VKILDHDSIA VIGVIKAK 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE000511 Genomic DNA. Translation: AAD08537.1.
PIRH64706.
RefSeqNP_208287.1. NC_000915.1.
YP_006935422.1. NC_018939.1.

3D structure databases

ProteinModelPortalP56078.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

DIPDIP-3750N.
IntActP56078. 4 interactions.
MINTMINT-179762.
STRING85962.HP1496.

Proteomic databases

PRIDEP56078.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAD08537; AAD08537; HP_1496.
GeneID899795.
KEGGheo:C694_07750.
hpy:HP1496.
PATRIC20594403. VBIHelPyl33062_1570.

Phylogenomic databases

eggNOGCOG1825.
KOK02897.
OMAYGKEREN.
OrthoDBEOG6SZ1PC.

Enzyme and pathway databases

BioCycHPY:HP1496-MONOMER.

Family and domain databases

Gene3D2.170.120.20. 1 hit.
2.40.240.10. 1 hit.
HAMAPMF_01334. Ribosomal_L25_CTC.
InterProIPR020056. Rbsml_L25/Gln-tRNA_synth_b-brl.
IPR011035. Ribosomal_L25/Gln-tRNA_synth.
IPR020057. Ribosomal_L25_b-dom.
IPR001021. Ribosomal_L25_long.
IPR020055. Ribosomal_L25_short.
[Graphical view]
PfamPF01386. Ribosomal_L25p. 1 hit.
PF14693. Ribosomal_TL5_C. 1 hit.
[Graphical view]
ProDomPD012503. Ribosomal_L25. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMSSF50715. SSF50715. 1 hit.
TIGRFAMsTIGR00731. ctc_TL5. 1 hit.
ProtoNetSearch...

Entry information

Entry nameRL25_HELPY
AccessionPrimary (citable) accession number: P56078
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: July 9, 2014
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

Helicobacter pylori

Helicobacter pylori (strain 26695): entries and gene names