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P56041 (RL16_HELPY) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 78. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L16
Gene names
Name:rplP
Ordered Locus Names:HP_1312
OrganismHelicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori) [Reference proteome] [HAMAP]
Taxonomic identifier85962 [NCBI]
Taxonomic lineageBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter

Protein attributes

Sequence length141 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs By similarity. HAMAP-Rule MF_01342

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01342

Sequence similarities

Belongs to the ribosomal protein L16P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
tRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

tRNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 14114150S ribosomal protein L16 HAMAP-Rule MF_01342
PRO_0000062115

Sequences

Sequence LengthMass (Da)Tools
P56041 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 1774627F9970A4AF

FASTA14116,046
        10         20         30         40         50         60 
MLMPKRTKYR KQMKGRNRGK AHRGNSIAFG DIAIKAIEHG RIDSRQIESA RVAMTRHIKR 

        70         80         90        100        110        120 
AGKVWIRVFP DKPLTAKPLE TRMGKGKGSV EKWVMNIKPG RIVYEMLGIE EGLAREALAL 

       130        140 
AQSKLPFKTK IVTCESENEI Y 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE000511 Genomic DNA. Translation: AAD08351.1.
RefSeqNP_208104.1. NC_000915.1.
YP_006935233.1. NC_018939.1.

3D structure databases

ProteinModelPortalP56041.
SMRP56041. Positions 1-133.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

DIPDIP-3634N.
IntActP56041. 9 interactions.
MINTMINT-162847.
STRING85962.HP1312.

Proteomic databases

PRIDEP56041.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAD08351; AAD08351; HP_1312.
GeneID900309.
KEGGheo:C694_06775.
hpy:HP1312.
PATRIC20594005. VBIHelPyl33062_1373.

Phylogenomic databases

eggNOGCOG0197.
KOK02878.
OMATFVSRMI.
OrthoDBEOG6WHNWS.

Enzyme and pathway databases

BioCycHPY:HP1312-MONOMER.

Family and domain databases

Gene3D3.90.1170.10. 1 hit.
HAMAPMF_01342. Ribosomal_L16.
InterProIPR016180. Ribosomal_L10e/L16.
IPR000114. Ribosomal_L16.
IPR020798. Ribosomal_L16_CS.
[Graphical view]
PANTHERPTHR12220. PTHR12220. 1 hit.
PfamPF00252. Ribosomal_L16. 1 hit.
[Graphical view]
PRINTSPR00060. RIBOSOMALL16.
SUPFAMSSF54686. SSF54686. 1 hit.
TIGRFAMsTIGR01164. rplP_bact. 1 hit.
PROSITEPS00586. RIBOSOMAL_L16_1. 1 hit.
PS00701. RIBOSOMAL_L16_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRL16_HELPY
AccessionPrimary (citable) accession number: P56041
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: July 9, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

Helicobacter pylori

Helicobacter pylori (strain 26695): entries and gene names