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P56041

- RL16_HELPY

UniProt

P56041 - RL16_HELPY

Protein

50S ribosomal protein L16

Gene

rplP

Organism
Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro
    3. tRNA binding Source: UniProtKB-KW

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding, tRNA-binding

    Enzyme and pathway databases

    BioCyciHPY:HP1312-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    50S ribosomal protein L16UniRule annotation
    Gene namesi
    Name:rplPUniRule annotation
    Ordered Locus Names:HP_1312
    OrganismiHelicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
    Taxonomic identifieri85962 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
    ProteomesiUP000000429: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 14114150S ribosomal protein L16PRO_0000062115Add
    BLAST

    Proteomic databases

    PRIDEiP56041.

    Interactioni

    Subunit structurei

    Part of the 50S ribosomal subunit.UniRule annotation

    Protein-protein interaction databases

    DIPiDIP-3634N.
    IntActiP56041. 9 interactions.
    MINTiMINT-162847.
    STRINGi85962.HP1312.

    Structurei

    3D structure databases

    ProteinModelPortaliP56041.
    SMRiP56041. Positions 1-133.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein L16P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0197.
    KOiK02878.
    OMAiTFVSRMI.
    OrthoDBiEOG6WHNWS.

    Family and domain databases

    Gene3Di3.90.1170.10. 1 hit.
    HAMAPiMF_01342. Ribosomal_L16.
    InterProiIPR016180. Ribosomal_L10e/L16.
    IPR000114. Ribosomal_L16.
    IPR020798. Ribosomal_L16_CS.
    [Graphical view]
    PANTHERiPTHR12220. PTHR12220. 1 hit.
    PfamiPF00252. Ribosomal_L16. 1 hit.
    [Graphical view]
    PRINTSiPR00060. RIBOSOMALL16.
    SUPFAMiSSF54686. SSF54686. 1 hit.
    TIGRFAMsiTIGR01164. rplP_bact. 1 hit.
    PROSITEiPS00586. RIBOSOMAL_L16_1. 1 hit.
    PS00701. RIBOSOMAL_L16_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P56041-1 [UniParc]FASTAAdd to Basket

    « Hide

    MLMPKRTKYR KQMKGRNRGK AHRGNSIAFG DIAIKAIEHG RIDSRQIESA    50
    RVAMTRHIKR AGKVWIRVFP DKPLTAKPLE TRMGKGKGSV EKWVMNIKPG 100
    RIVYEMLGIE EGLAREALAL AQSKLPFKTK IVTCESENEI Y 141
    Length:141
    Mass (Da):16,046
    Last modified:November 1, 1997 - v1
    Checksum:i1774627F9970A4AF
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE000511 Genomic DNA. Translation: AAD08351.1.
    RefSeqiNP_208104.1. NC_000915.1.
    YP_006935233.1. NC_018939.1.

    Genome annotation databases

    EnsemblBacteriaiAAD08351; AAD08351; HP_1312.
    GeneIDi13870520.
    900309.
    KEGGiheo:C694_06775.
    hpy:HP1312.
    PATRICi20594005. VBIHelPyl33062_1373.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE000511 Genomic DNA. Translation: AAD08351.1 .
    RefSeqi NP_208104.1. NC_000915.1.
    YP_006935233.1. NC_018939.1.

    3D structure databases

    ProteinModelPortali P56041.
    SMRi P56041. Positions 1-133.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    DIPi DIP-3634N.
    IntActi P56041. 9 interactions.
    MINTi MINT-162847.
    STRINGi 85962.HP1312.

    Proteomic databases

    PRIDEi P56041.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAD08351 ; AAD08351 ; HP_1312 .
    GeneIDi 13870520.
    900309.
    KEGGi heo:C694_06775.
    hpy:HP1312.
    PATRICi 20594005. VBIHelPyl33062_1373.

    Phylogenomic databases

    eggNOGi COG0197.
    KOi K02878.
    OMAi TFVSRMI.
    OrthoDBi EOG6WHNWS.

    Enzyme and pathway databases

    BioCyci HPY:HP1312-MONOMER.

    Family and domain databases

    Gene3Di 3.90.1170.10. 1 hit.
    HAMAPi MF_01342. Ribosomal_L16.
    InterProi IPR016180. Ribosomal_L10e/L16.
    IPR000114. Ribosomal_L16.
    IPR020798. Ribosomal_L16_CS.
    [Graphical view ]
    PANTHERi PTHR12220. PTHR12220. 1 hit.
    Pfami PF00252. Ribosomal_L16. 1 hit.
    [Graphical view ]
    PRINTSi PR00060. RIBOSOMALL16.
    SUPFAMi SSF54686. SSF54686. 1 hit.
    TIGRFAMsi TIGR01164. rplP_bact. 1 hit.
    PROSITEi PS00586. RIBOSOMAL_L16_1. 1 hit.
    PS00701. RIBOSOMAL_L16_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 700392 / 26695.

    Entry informationi

    Entry nameiRL16_HELPY
    AccessioniPrimary (citable) accession number: P56041
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 80 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Helicobacter pylori
      Helicobacter pylori (strain 26695): entries and gene names
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3