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P56038 (RL13_HELPY) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 66. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L13
Gene names
Name:rplM
Ordered Locus Names:HP_0084
OrganismHelicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Taxonomic identifier85962 [NCBI]
Taxonomic lineageBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter

Protein attributes

Sequence length141 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly By similarity. HAMAP MF_01366_B

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP MF_01366_B

Sequence similarities

Belongs to the ribosomal protein L13P family.

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological processtranslation

Inferred from electronic annotation. Source: InterPro

   Cellular componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 14114150S ribosomal protein L13 HAMAP MF_01366_B
PRO_0000133739

Sequences

Sequence LengthMass (Da)Tools
P56038 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: E3BA1AD0AE0F3725

FASTA14116,112
        10         20         30         40         50         60 
MTKTAKVNDI VRDWVVLDAK DKVFGRLITE IAVLLRGKHR PFYTPNVDCG DFVVVINANK 

        70         80         90        100        110        120 
VKFSGMKLED KEYFTHSGYF GSTKSKTLQE MLEKAPEKLY HLAVRGMLPK TKLGKAMIKK 

       130        140 
LKVYRDDKHP HTAQTSKKDA K 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE000511 Genomic DNA. Translation: AAD07154.1.
PIRD64530.
RefSeqNP_206884.1. NC_000915.1.

3D structure databases

ProteinModelPortalP56038.
SMRP56038. Positions 4-137.
ModBaseSearch...

Protein-protein interaction databases

DIPDIP-3161N.
MINTMINT-160646.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID898946.
GenomeReviewsGene locus HP_0084 in contig AE000511_GR.
KEGGhpy:HP0084.
NMPDRfig|85962.1.peg.82.
PATRIC20591377. VBIHelPyl33062_0089.
TIGRHP_0084.

Phylogenomic databases

HOGENOMHBG380826.
OMAYTPHMDC.
ProtClustDBPRK09216.

Family and domain databases

HAMAPMF_01366_B. Ribosomal_L13_B.
[Tree]
InterProIPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
IPR023564. Ribosomal_L13_dom.
[Graphical view]
Gene3DG3DSA:3.90.1180.10. Ribosomal_L13. 1 hit.
KOK02871.
PANTHERPTHR11545. Ribosomal_L13. 1 hit.
PfamPF00572. Ribosomal_L13. 1 hit.
[Graphical view]
PIRSFPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMSSF52161. Ribosomal_L13. 1 hit.
TIGRFAMsTIGR01066. RplM_bact. 1 hit.
PROSITEPS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRL13_HELPY
AccessionPrimary (citable) accession number: P56038
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: January 25, 2012
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Ribosomal proteins

Ribosomal proteins families and list of entries

Helicobacter pylori

Helicobacter pylori (strain 26695): entries and gene names

SIMILARITY comments

Index of protein domains and families