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Reviewed, UniProtKB/Swiss-Prot P56038 (RL13_HELPY)

Last modified November 24, 2009. Version 51. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    50S ribosomal protein L13
Gene names
Name: rplM
Ordered Locus Names: HP_0084
OrganismHelicobacter pylori (Campylobacter pylori) [Complete proteome] [HAMAP]
Taxonomic identifier210 [NCBI]
Taxonomic lineageBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter

Protein attributes

Sequence length141 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

General annotation (Comments)

Function

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly By similarity.

Subunit structure

Part of the 50S ribosomal subunit By similarity.

Sequence similarities

Belongs to the ribosomal protein L13P family.

Ontologies

Keywords
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processtranslation

Inferred from electronic annotation. Source: HAMAP

   Cellular componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionstructural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 14114150S ribosomal protein L13 HAMAP MF_01366
PRO_0000133739

Sequences

Sequence LengthMass (Da)Tools
P56038-1 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: E3BA1AD0AE0F3725

FASTA14116,112
        10         20         30         40         50         60 
MTKTAKVNDI VRDWVVLDAK DKVFGRLITE IAVLLRGKHR PFYTPNVDCG DFVVVINANK 

        70         80         90        100        110        120 
VKFSGMKLED KEYFTHSGYF GSTKSKTLQE MLEKAPEKLY HLAVRGMLPK TKLGKAMIKK 

       130        140 
LKVYRDDKHP HTAQTSKKDA K 

« Hide

Cross-references

Sequence databases

AE000511 Genomic DNA. Translation: AAD07154.1.
PIRD64530.
RefSeqNP_206884.1.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

DIPDIP:3161N.

Genome annotation databases

GeneID898946.
GenomeReviewsGene locus HP_0084 in contig AE000511_GR.
KEGGhpy:HP0084.
NMPDRfig|85962.1.peg.82.
TIGRHP_0084.

Phylogenomic databases

HOGENOMP56038.
OMADVSLGRL

Family and domain databases

HAMAPMF_01366.
[Tree]
InterProIPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
[Graphical view]
Gene3DG3DSA:3.90.1180.10. Ribosomal_L13. 1 hit.
PANTHERPTHR11545:SF2. Ribosom_L13_bac. 1 hit.
PTHR11545. Ribosomal_L13. 1 hit.
PfamPF00572. Ribosomal_L13. 1 hit.
[Graphical view]
PIRSFPIRSF002181. Ribosomal_L13. 1 hit.
TIGRFAMsTIGR01066. rplM_bact. 1 hit.
PROSITEPS00783. RIBOSOMAL_L13. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRL13_HELPY
AccessionPrimary (citable) accession number: P56038
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 24, 2009
This is version 51 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

Helicobacter pylori

Helicobacter pylori (strain 26695): entries and gene names

Ribosomal proteins

Ribosomal proteins families and list of entries

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents