P56038 (RL13_HELPY) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L13

Gene names

Name:	rplM
Ordered Locus Names:	HP_0084

Organism

Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)

Taxonomic identifier

85962 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Epsilonproteobacteria › Campylobacterales › Helicobacteraceae › Helicobacter

Protein attributes

Sequence length	141 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly By similarity. HAMAP MF_01366_B
Subunit structure	Part of the 50S ribosomal subunit By similarity. HAMAP MF_01366_B
Sequence similarities	Belongs to the ribosomal protein L13P family.

Ontologies

Keywords
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 141	141	50S ribosomal protein L13 HAMAP MF_01366_B		PRO_0000133739

Sequences

	Sequence		Length	Mass (Da)
	P56038 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: E3BA1AD0AE0F3725	FASTA	141	16,112
	10 20 30 40 50 60 MTKTAKVNDI VRDWVVLDAK DKVFGRLITE IAVLLRGKHR PFYTPNVDCG DFVVVINANK 70 80 90 100 110 120 VKFSGMKLED KEYFTHSGYF GSTKSKTLQE MLEKAPEKLY HLAVRGMLPK TKLGKAMIKK 130 140 LKVYRDDKHP HTAQTSKKDA K

References

[1]

"The complete genome sequence of the gastric pathogen Helicobacter pylori." Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J. , Khalak H.G., Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., Smith H.O., Fraser C.M., Venter J.C. Nature 388:539-547(1997) [PubMed: 9252185] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700392 / 26695.

+

Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE000511 Genomic DNA. Translation: AAD07154.1.
PIR	D64530.
RefSeq	NP_206884.1. NC_000915.1.
3D structure databases
ProteinModelPortal	P56038.
SMR	P56038. Positions 4-137.
ModBase	Search...
Protein-protein interaction databases
DIP	DIP-3161N.
MINT	MINT-160646.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	898946.
GenomeReviews	Gene locus HP_0084 in contig AE000511_GR.
KEGG	hpy:HP0084.
NMPDR	fig|85962.1.peg.82.
PATRIC	20591377. VBIHelPyl33062_0089.
TIGR	HP_0084.
Phylogenomic databases
HOGENOM	HBG380826.
OMA	YTPHMDC.
ProtClustDB	PRK09216.
Family and domain databases
HAMAP	MF_01366_B. Ribosomal_L13_B. [Tree]
InterPro	IPR005822. Ribosomal_L13. IPR005823. Ribosomal_L13_bac-type. IPR023563. Ribosomal_L13_CS. IPR023564. Ribosomal_L13_dom. [Graphical view]
Gene3D	G3DSA:3.90.1180.10. Ribosomal_L13. 1 hit.
KO	K02871.
PANTHER	PTHR11545. Ribosomal_L13. 1 hit.
Pfam	PF00572. Ribosomal_L13. 1 hit. [Graphical view]
PIRSF	PIRSF002181. Ribosomal_L13. 1 hit.
SUPFAM	SSF52161. Ribosomal_L13. 1 hit.
TIGRFAMs	TIGR01066. RplM_bact. 1 hit.
PROSITE	PS00783. RIBOSOMAL_L13. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL13_HELPY

Accession

Primary (citable) accession number: P56038

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	January 25, 2012
This is version 66 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program