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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciHPY:HP0084-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:HP_0084
OrganismiHelicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Taxonomic identifieri85962 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
Proteomesi
  • UP000000429 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001337391 – 14150S ribosomal protein L13Add BLAST141

Proteomic databases

PaxDbiP56038.

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

DIPiDIP-3161N.
IntActiP56038. 2 interactors.
MINTiMINT-160646.
STRINGi85962.HP0084.

Structurei

3D structure databases

ProteinModelPortaliP56038.
SMRiP56038.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UM5. Bacteria.
COG0102. LUCA.
KOiK02871.
OMAiVLMGKHK.

Family and domain databases

CDDicd00392. Ribosomal_L13. 1 hit.
Gene3Di3.90.1180.10. 1 hit.
HAMAPiMF_01366. Ribosomal_L13. 1 hit.
InterProiView protein in InterPro
IPR005822. Ribosomal_L13.
IPR005823. Ribosomal_L13_bac-type.
IPR023563. Ribosomal_L13_CS.
PANTHERiPTHR11545. PTHR11545. 1 hit.
PfamiView protein in Pfam
PF00572. Ribosomal_L13. 1 hit.
PIRSFiPIRSF002181. Ribosomal_L13. 1 hit.
SUPFAMiSSF52161. SSF52161. 1 hit.
TIGRFAMsiTIGR01066. rplM_bact. 1 hit.
PROSITEiView protein in PROSITE
PS00783. RIBOSOMAL_L13. 1 hit.

Sequencei

Sequence statusi: Complete.

P56038-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTKTAKVNDI VRDWVVLDAK DKVFGRLITE IAVLLRGKHR PFYTPNVDCG
60 70 80 90 100
DFVVVINANK VKFSGMKLED KEYFTHSGYF GSTKSKTLQE MLEKAPEKLY
110 120 130 140
HLAVRGMLPK TKLGKAMIKK LKVYRDDKHP HTAQTSKKDA K
Length:141
Mass (Da):16,112
Last modified:November 1, 1997 - v1
Checksum:iE3BA1AD0AE0F3725
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000511 Genomic DNA. Translation: AAD07154.1.
PIRiD64530.
RefSeqiNP_206884.1. NC_000915.1.
WP_000167671.1. NC_018939.1.

Genome annotation databases

EnsemblBacteriaiAAD07154; AAD07154; HP_0084.
GeneIDi898946.
KEGGiheo:C694_00410.
hpy:HP0084.
PATRICifig|85962.47.peg.90.

Similar proteinsi

Entry informationi

Entry nameiRL13_HELPY
AccessioniPrimary (citable) accession number: P56038
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: June 7, 2017
This is version 97 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Helicobacter pylori
    Helicobacter pylori (strain 26695): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families