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Protein

50S ribosomal protein L10

Gene

rplJ

Organism
Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.By similarity

GO - Molecular functioni

  1. large ribosomal subunit rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro

GO - Biological processi

  1. ribosome biogenesis Source: InterPro
  2. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciHPY:HP1200-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L10
Gene namesi
Name:rplJ
Ordered Locus Names:HP_1200
OrganismiHelicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Taxonomic identifieri85962 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
ProteomesiUP000000429 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 16416450S ribosomal protein L10PRO_0000154641Add
BLAST

Proteomic databases

PRIDEiP56036.

Interactioni

Subunit structurei

Part of the ribosomal stalk of the 50S ribosomal subunit. The N-terminus interacts with L11 and the large rRNA to form the base of the stalk. The C-terminus forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex (By similarity).By similarity

Binary interactionsi

WithEntry#Exp.IntActNotes
rplLP558343EBI-7694828,EBI-7696366

Protein-protein interaction databases

DIPiDIP-3052N.
IntActiP56036. 4 interactions.
MINTiMINT-164442.
STRINGi85962.HP1200.

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein L10P family.Curated

Phylogenomic databases

eggNOGiCOG0244.
KOiK02864.
OMAiIQNFTIG.
OrthoDBiEOG6DNTDR.

Family and domain databases

HAMAPiMF_00362. Ribosomal_L10.
InterProiIPR022973. Ribosomal_L10.
IPR002363. Ribosomal_L10_eubac_CS.
IPR001790. Ribosomal_L10P.
[Graphical view]
PfamiPF00466. Ribosomal_L10. 1 hit.
[Graphical view]
PROSITEiPS01109. RIBOSOMAL_L10. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P56036-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQKQHQRQHK VELVANLKSQ FADAKALLIC DYKGLSVRKL EALRNKARNQ
60 70 80 90 100
GIKVQVIKNT LAHIAMKETG YSDLDLKETN VFLWGGDQIA LSKLVFDFQK
110 120 130 140 150
EHKDHFVLKA GLFDKESVSV AHVEAVSKLP SKEELMGMLL SVWTAPARYF
160
VTGLDNLRKA KEEN
Length:164
Mass (Da):18,606
Last modified:October 31, 1997 - v1
Checksum:i9915415D78AF5D97
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000511 Genomic DNA. Translation: AAD08246.1.
PIRiH64669.
RefSeqiNP_207991.1. NC_000915.1.
YP_006935120.1. NC_018939.1.

Genome annotation databases

EnsemblBacteriaiAAD08246; AAD08246; HP_1200.
GeneIDi899962.
KEGGiheo:C694_06210.
hpy:HP1200.
PATRICi20593759. VBIHelPyl33062_1257.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000511 Genomic DNA. Translation: AAD08246.1.
PIRiH64669.
RefSeqiNP_207991.1. NC_000915.1.
YP_006935120.1. NC_018939.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-3052N.
IntActiP56036. 4 interactions.
MINTiMINT-164442.
STRINGi85962.HP1200.

Proteomic databases

PRIDEiP56036.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAD08246; AAD08246; HP_1200.
GeneIDi899962.
KEGGiheo:C694_06210.
hpy:HP1200.
PATRICi20593759. VBIHelPyl33062_1257.

Phylogenomic databases

eggNOGiCOG0244.
KOiK02864.
OMAiIQNFTIG.
OrthoDBiEOG6DNTDR.

Enzyme and pathway databases

BioCyciHPY:HP1200-MONOMER.

Family and domain databases

HAMAPiMF_00362. Ribosomal_L10.
InterProiIPR022973. Ribosomal_L10.
IPR002363. Ribosomal_L10_eubac_CS.
IPR001790. Ribosomal_L10P.
[Graphical view]
PfamiPF00466. Ribosomal_L10. 1 hit.
[Graphical view]
PROSITEiPS01109. RIBOSOMAL_L10. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700392 / 26695.

Entry informationi

Entry nameiRL10_HELPY
AccessioniPrimary (citable) accession number: P56036
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 1997
Last sequence update: October 31, 1997
Last modified: March 31, 2015
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Helicobacter pylori
    Helicobacter pylori (strain 26695): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.