P56035 (RL9_HELPY) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
50S ribosomal protein L9

Gene names

Name:	rplI
Ordered Locus Names:	HP_0514

Organism

Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori) [Reference proteome] [HAMAP]

Taxonomic identifier

85962 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › delta/epsilon subdivisions › Epsilonproteobacteria › Campylobacterales › Helicobacteraceae › Helicobacter › Helicobacter pylori

Protein attributes

Sequence length	149 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Binds to the 23S rRNA By similarity. HAMAP-Rule MF_00503
Sequence similarities	Belongs to the ribosomal protein L9P family.
Sequence caution	The sequence AAD07582.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	translation Inferred from electronic annotation. Source: HAMAP
Cellular_component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	rRNA binding Inferred from electronic annotation. Source: HAMAP structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 149	149	50S ribosomal protein L9 HAMAP-Rule MF_00503		PRO_0000176642

Sequences

	Sequence		Length	Mass (Da)
	P56035 [UniParc]. Last modified December 13, 2001. Version 2. Checksum: E9B40FEA264F1C95	FASTA	149	16,460
	10 20 30 40 50 60 MKVLLLEDVK NLGKAGEVCE VKDGYGNNFL IANQKAKLAT NEVINKYKAE VKKKAEKEAL 70 80 90 100 110 120 EKAQKLQMVE TLQTITLTIH KKVGANGSLF GAITKEEITE RLKEQHASLN LDKKDIELKH 130 140 PIKSTGIYEI EVKLGSGVVG VFKIDVVAE

References

[1]

"The complete genome sequence of the gastric pathogen Helicobacter pylori." Tomb J.-F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., Fleischmann R.D., Ketchum K.A., Klenk H.-P., Gill S.R., Dougherty B.A., Nelson K.E., Quackenbush J., Zhou L., Kirkness E.F., Peterson S.N., Loftus B.J., Richardson D.L., Dodson R.J. , Khalak H.G., Glodek A., McKenney K., FitzGerald L.M., Lee N., Adams M.D., Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., Cotton M.D., Weidman J.F., Fujii C., Bowman C., Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., Smith H.O., Fraser C.M., Venter J.C. Nature 388:539-547(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 700392 / 26695.

+

Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE000511 Genomic DNA. Translation: AAD07582.1. Different initiation.
PIR	B64584.
RefSeq	NP_207311.1. NC_000915.1. YP_006934435.1. NC_018939.1.
3D structure databases
ProteinModelPortal	P56035.
ModBase	Search...
Protein-protein interaction databases
DIP	DIP-3673N.
MINT	MINT-178039.
STRING	85962.HP0514.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAD07582; AAD07582; HP_0514.
GeneID	13869703. 899264.
KEGG	heo:C694_02645. hpy:HP0514.
PATRIC	20592305. VBIHelPyl33062_0541.
Phylogenomic databases
eggNOG	COG0359.
KO	K02939.
OMA	TGIYEIE.
ProtClustDB	PRK00137.
Family and domain databases
Gene3D	3.10.430.100. 1 hit. 3.40.5.10. 1 hit.
HAMAP	MF_00503. Ribosomal_L9.
InterPro	IPR000244. Ribosomal_L9. IPR009027. Ribosomal_L9/RNase_H1_N. IPR020594. Ribosomal_L9_bac/chp. IPR020069. Ribosomal_L9_C. IPR020070. Ribosomal_L9_N. [Graphical view]
PANTHER	PTHR21368. PTHR21368. 1 hit.
Pfam	PF03948. Ribosomal_L9_C. 1 hit. PF01281. Ribosomal_L9_N. 1 hit. [Graphical view]
SUPFAM	SSF55658. L9_N_like. 1 hit. SSF55653. Ribosomal_L9. 1 hit.
TIGRFAMs	TIGR00158. L9. 1 hit.
PROSITE	PS00651. RIBOSOMAL_L9. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RL9_HELPY

Accession

Primary (citable) accession number: P56035

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	December 13, 2001
Last modified:	May 1, 2013
This is version 77 of the entry and version 2 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program