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P56034 (RL6_HELPY) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 77. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
50S ribosomal protein L6
Gene names
Name:rplF
Ordered Locus Names:HP_1304
OrganismHelicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori) [Reference proteome] [HAMAP]
Taxonomic identifier85962 [NCBI]
Taxonomic lineageBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter

Protein attributes

Sequence length178 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center By similarity. HAMAP-Rule MF_01365

Subunit structure

Part of the 50S ribosomal subunit By similarity. HAMAP-Rule MF_01365

Sequence similarities

Belongs to the ribosomal protein L6P family.

Ontologies

Keywords
   LigandRNA-binding
rRNA-binding
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processtranslation

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Cellular_componentribosome

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular_functionrRNA binding

Inferred from electronic annotation. Source: UniProtKB-HAMAP

structural constituent of ribosome

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 17817850S ribosomal protein L6 HAMAP-Rule MF_01365
PRO_0000131052

Sequences

Sequence LengthMass (Da)Tools
P56034 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 7014ACBAED5B8EF3

FASTA17819,486
        10         20         30         40         50         60 
MSRIGKRIIE IPSSVQASVE GSKLLFKNSK EKHELETHNR VKITLENNQL SFQPVGEDAQ 

        70         80         90        100        110        120 
SRAYWGTYGA LANNIVIGLS TGFSKTLEVN GVGYKVALGN KTLDLSLGFS HPVKYPIPAG 

       130        140        150        160        170 
IEMVVEKNTI TIKGSDKQKV GQVAAEIRSF RPPEPYKGKG VKYSDEVIIR KAGKTAKK 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE000511 Genomic DNA. Translation: AAD08345.1.
PIRH64682.
RefSeqNP_208096.1. NC_000915.1.
YP_006935225.1. NC_018939.1.

3D structure databases

ProteinModelPortalP56034.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING85962.HP1304.

Proteomic databases

PRIDEP56034.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAD08345; AAD08345; HP_1304.
GeneID898751.
KEGGheo:C694_06735.
hpy:HP1304.
PATRIC20593989. VBIHelPyl33062_1365.

Phylogenomic databases

eggNOGCOG0097.
KOK02933.
OMAGNVITFA.
OrthoDBEOG67DPRD.

Enzyme and pathway databases

BioCycHPY:HP1304-MONOMER.

Family and domain databases

Gene3D3.90.930.12. 2 hits.
HAMAPMF_01365_B. Ribosomal_L6_B.
InterProIPR000702. Ribosomal_L6.
IPR020040. Ribosomal_L6_a/b-dom.
IPR019906. Ribosomal_L6_bac-type.
IPR002358. Ribosomal_L6_CS.
[Graphical view]
PANTHERPTHR11655. PTHR11655. 1 hit.
PfamPF00347. Ribosomal_L6. 2 hits.
[Graphical view]
PIRSFPIRSF002162. Ribosomal_L6. 1 hit.
PRINTSPR00059. RIBOSOMALL6.
SUPFAMSSF56053. SSF56053. 2 hits.
TIGRFAMsTIGR03654. L6_bact. 1 hit.
PROSITEPS00525. RIBOSOMAL_L6_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRL6_HELPY
AccessionPrimary (citable) accession number: P56034
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: July 9, 2014
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Ribosomal proteins

Ribosomal proteins families and list of entries

Helicobacter pylori

Helicobacter pylori (strain 26695): entries and gene names