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Protein

50S ribosomal protein L6

Gene

rplF

Organism
Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciHPY:HP1304-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L6UniRule annotation
Gene namesi
Name:rplFUniRule annotation
Ordered Locus Names:HP_1304
OrganismiHelicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Taxonomic identifieri85962 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
Proteomesi
  • UP000000429 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001310521 – 17850S ribosomal protein L6Add BLAST178

Proteomic databases

PaxDbiP56034

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi85962.HP1304

Structurei

3D structure databases

ProteinModelPortaliP56034
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL6 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108R5J Bacteria
COG0097 LUCA
KOiK02933
OMAiINNMVVG

Family and domain databases

Gene3Di3.90.930.12, 2 hits
HAMAPiMF_01365_B Ribosomal_L6_B, 1 hit
InterProiView protein in InterPro
IPR000702 Ribosomal_L6
IPR020040 Ribosomal_L6_a/b-dom
IPR036789 Ribosomal_L6_a/b-dom_sf
IPR019906 Ribosomal_L6_bac-type
IPR002358 Ribosomal_L6_CS
PANTHERiPTHR11655 PTHR11655, 1 hit
PTHR11655:SF14 PTHR11655:SF14, 1 hit
PfamiView protein in Pfam
PF00347 Ribosomal_L6, 2 hits
PIRSFiPIRSF002162 Ribosomal_L6, 1 hit
PRINTSiPR00059 RIBOSOMALL6
SUPFAMiSSF56053 SSF56053, 2 hits
TIGRFAMsiTIGR03654 L6_bact, 1 hit
PROSITEiView protein in PROSITE
PS00525 RIBOSOMAL_L6_1, 1 hit

Sequencei

Sequence statusi: Complete.

P56034-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRIGKRIIE IPSSVQASVE GSKLLFKNSK EKHELETHNR VKITLENNQL
60 70 80 90 100
SFQPVGEDAQ SRAYWGTYGA LANNIVIGLS TGFSKTLEVN GVGYKVALGN
110 120 130 140 150
KTLDLSLGFS HPVKYPIPAG IEMVVEKNTI TIKGSDKQKV GQVAAEIRSF
160 170
RPPEPYKGKG VKYSDEVIIR KAGKTAKK
Length:178
Mass (Da):19,486
Last modified:November 1, 1997 - v1
Checksum:i7014ACBAED5B8EF3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000511 Genomic DNA Translation: AAD08345.1
PIRiH64682
RefSeqiNP_208096.1, NC_000915.1
WP_000086592.1, NC_018939.1

Genome annotation databases

EnsemblBacteriaiAAD08345; AAD08345; HP_1304
GeneIDi898751
KEGGiheo:C694_06735
hpy:HP1304
PATRICifig|85962.47.peg.1398

Similar proteinsi

Entry informationi

Entry nameiRL6_HELPY
AccessioniPrimary (citable) accession number: P56034
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: March 28, 2018
This is version 92 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health