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Protein

30S ribosomal protein S20

Gene

rpsT

Organism
Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds directly to 16S ribosomal RNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciHPY:HP0076-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S20UniRule annotation
Gene namesi
Name:rpsTUniRule annotation
Ordered Locus Names:HP_0076
OrganismiHelicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Taxonomic identifieri85962 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
Proteomesi
  • UP000000429 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001679711 – 8930S ribosomal protein S20Add BLAST89

Proteomic databases

PaxDbiP56027.

Interactioni

Protein-protein interaction databases

STRINGi85962.HP0076.

Structurei

3D structure databases

ProteinModelPortaliP56027.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S20P family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108317. Bacteria.
COG0268. LUCA.
KOiK02968.
OMAiFEPEIMR.

Family and domain databases

Gene3Di1.20.58.110. 1 hit.
HAMAPiMF_00500. Ribosomal_S20. 1 hit.
InterProiIPR002583. Ribosomal_S20.
[Graphical view]
PfamiPF01649. Ribosomal_S20p. 1 hit.
[Graphical view]
ProDomiPD004231. Ribosomal_S20. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46992. SSF46992. 1 hit.
TIGRFAMsiTIGR00029. S20. 1 hit.

Sequencei

Sequence statusi: Complete.

P56027-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MANHKSAEKR IRQTIKRTER NRFYKTKIKN IIKAVREAVA VNDVAKAQER
60 70 80
LKIANKELHK FVSKGILKKN TASRKVSRLN ASVKKIALA
Length:89
Mass (Da):10,196
Last modified:November 1, 1997 - v1
Checksum:iFD2DA520B39FEA36
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000511 Genomic DNA. Translation: AAD07147.1.
PIRiD64529.
RefSeqiNP_206876.1. NC_000915.1.
WP_001273615.1. NC_018939.1.

Genome annotation databases

EnsemblBacteriaiAAD07147; AAD07147; HP_0076.
GeneIDi898977.
KEGGiheo:C694_00370.
hpy:HP0076.
PATRICi20591357. VBIHelPyl33062_0079.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000511 Genomic DNA. Translation: AAD07147.1.
PIRiD64529.
RefSeqiNP_206876.1. NC_000915.1.
WP_001273615.1. NC_018939.1.

3D structure databases

ProteinModelPortaliP56027.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi85962.HP0076.

Proteomic databases

PaxDbiP56027.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAD07147; AAD07147; HP_0076.
GeneIDi898977.
KEGGiheo:C694_00370.
hpy:HP0076.
PATRICi20591357. VBIHelPyl33062_0079.

Phylogenomic databases

eggNOGiENOG4108317. Bacteria.
COG0268. LUCA.
KOiK02968.
OMAiFEPEIMR.

Enzyme and pathway databases

BioCyciHPY:HP0076-MONOMER.

Family and domain databases

Gene3Di1.20.58.110. 1 hit.
HAMAPiMF_00500. Ribosomal_S20. 1 hit.
InterProiIPR002583. Ribosomal_S20.
[Graphical view]
PfamiPF01649. Ribosomal_S20p. 1 hit.
[Graphical view]
ProDomiPD004231. Ribosomal_S20. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46992. SSF46992. 1 hit.
TIGRFAMsiTIGR00029. S20. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRS20_HELPY
AccessioniPrimary (citable) accession number: P56027
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: October 5, 2016
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Helicobacter pylori
    Helicobacter pylori (strain 26695): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.