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Protein

30S ribosomal protein S20

Gene

rpsT

Organism
Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Binds directly to 16S ribosomal RNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding

Enzyme and pathway databases

BioCyciHPY:HP0076-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S20UniRule annotation
Gene namesi
Name:rpsTUniRule annotation
Ordered Locus Names:HP_0076
OrganismiHelicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Taxonomic identifieri85962 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
ProteomesiUP000000429 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 898930S ribosomal protein S20PRO_0000167971Add
BLAST

Proteomic databases

PRIDEiP56027.

Interactioni

Protein-protein interaction databases

STRINGi85962.HP0076.

Structurei

3D structure databases

ProteinModelPortaliP56027.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S20P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0268.
KOiK02968.
OMAiFEPEIMR.
OrthoDBiEOG6HMXNQ.

Family and domain databases

Gene3Di1.20.58.110. 1 hit.
HAMAPiMF_00500. Ribosomal_S20.
InterProiIPR002583. Ribosomal_S20.
[Graphical view]
PfamiPF01649. Ribosomal_S20p. 1 hit.
[Graphical view]
ProDomiPD004231. Ribosomal_S20. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46992. SSF46992. 1 hit.
TIGRFAMsiTIGR00029. S20. 1 hit.

Sequencei

Sequence statusi: Complete.

P56027-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MANHKSAEKR IRQTIKRTER NRFYKTKIKN IIKAVREAVA VNDVAKAQER
60 70 80
LKIANKELHK FVSKGILKKN TASRKVSRLN ASVKKIALA
Length:89
Mass (Da):10,196
Last modified:November 1, 1997 - v1
Checksum:iFD2DA520B39FEA36
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000511 Genomic DNA. Translation: AAD07147.1.
PIRiD64529.
RefSeqiNP_206876.1. NC_000915.1.
WP_001273615.1. NC_018939.1.

Genome annotation databases

EnsemblBacteriaiAAD07147; AAD07147; HP_0076.
GeneIDi898977.
KEGGiheo:C694_00370.
hpy:HP0076.
PATRICi20591357. VBIHelPyl33062_0079.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE000511 Genomic DNA. Translation: AAD07147.1.
PIRiD64529.
RefSeqiNP_206876.1. NC_000915.1.
WP_001273615.1. NC_018939.1.

3D structure databases

ProteinModelPortaliP56027.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi85962.HP0076.

Proteomic databases

PRIDEiP56027.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAD07147; AAD07147; HP_0076.
GeneIDi898977.
KEGGiheo:C694_00370.
hpy:HP0076.
PATRICi20591357. VBIHelPyl33062_0079.

Phylogenomic databases

eggNOGiCOG0268.
KOiK02968.
OMAiFEPEIMR.
OrthoDBiEOG6HMXNQ.

Enzyme and pathway databases

BioCyciHPY:HP0076-MONOMER.

Family and domain databases

Gene3Di1.20.58.110. 1 hit.
HAMAPiMF_00500. Ribosomal_S20.
InterProiIPR002583. Ribosomal_S20.
[Graphical view]
PfamiPF01649. Ribosomal_S20p. 1 hit.
[Graphical view]
ProDomiPD004231. Ribosomal_S20. 1 hit.
[Graphical view] [Entries sharing at least one domain]
SUPFAMiSSF46992. SSF46992. 1 hit.
TIGRFAMsiTIGR00029. S20. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700392 / 26695.

Entry informationi

Entry nameiRS20_HELPY
AccessioniPrimary (citable) accession number: P56027
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: July 22, 2015
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Helicobacter pylori
    Helicobacter pylori (strain 26695): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.