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P56020

- RS13_HELPY

UniProt

P56020 - RS13_HELPY

Protein

30S ribosomal protein S13

Gene

rpsM

Organism
Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
  1. Functioni

    Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites.UniRule annotation

    GO - Molecular functioni

    1. rRNA binding Source: UniProtKB-HAMAP
    2. structural constituent of ribosome Source: InterPro
    3. tRNA binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. translation Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Ribonucleoprotein, Ribosomal protein

    Keywords - Ligandi

    RNA-binding, rRNA-binding, tRNA-binding

    Enzyme and pathway databases

    BioCyciHPY:HP1296-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    30S ribosomal protein S13UniRule annotation
    Gene namesi
    Name:rpsMUniRule annotation
    Ordered Locus Names:HP_1296
    OrganismiHelicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
    Taxonomic identifieri85962 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
    ProteomesiUP000000429: Chromosome

    Subcellular locationi

    GO - Cellular componenti

    1. ribosome Source: UniProtKB-KW

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 12012030S ribosomal protein S13PRO_0000132096Add
    BLAST

    Proteomic databases

    PRIDEiP56020.

    Interactioni

    Subunit structurei

    Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome.UniRule annotation

    Protein-protein interaction databases

    STRINGi85962.HP1296.

    Structurei

    3D structure databases

    ProteinModelPortaliP56020.
    SMRiP56020. Positions 2-120.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ribosomal protein S13P family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0099.
    KOiK02952.
    OMAiREISINI.
    OrthoDBiEOG618R01.

    Family and domain databases

    Gene3Di4.10.910.10. 1 hit.
    HAMAPiMF_01315. Ribosomal_S13_S18.
    InterProiIPR027437. 30s_Rbsml_prot_S13_C.
    IPR001892. Ribosomal_S13.
    IPR010979. Ribosomal_S13-like_H2TH.
    IPR019980. Ribosomal_S13_bac-type.
    IPR018269. Ribosomal_S13_CS.
    [Graphical view]
    PfamiPF00416. Ribosomal_S13. 1 hit.
    [Graphical view]
    PIRSFiPIRSF002134. Ribosomal_S13. 1 hit.
    SUPFAMiSSF46946. SSF46946. 1 hit.
    TIGRFAMsiTIGR03631. bact_S13. 1 hit.
    PROSITEiPS00646. RIBOSOMAL_S13_1. 1 hit.
    PS50159. RIBOSOMAL_S13_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P56020-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARIAGVDLP KKKRVEYALT YIYGIGLKSS REILEAVGIS FDKRVHELSE    50
    DEVSSIAKKI QQSYLVEGDL RKKVQMDIKS LMDLGNYRGI RHRKGLPVRG 100
    QTTKNNARTR KGKKKTVGSK 120
    Length:120
    Mass (Da):13,575
    Last modified:November 1, 1997 - v1
    Checksum:iDBD77A7416A72795
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE000511 Genomic DNA. Translation: AAD08339.1.
    PIRiH64681.
    RefSeqiNP_208088.1. NC_000915.1.
    YP_006935217.1. NC_018939.1.

    Genome annotation databases

    EnsemblBacteriaiAAD08339; AAD08339; HP_1296.
    GeneIDi13870504.
    900282.
    KEGGiheo:C694_06695.
    hpy:HP1296.
    PATRICi20593973. VBIHelPyl33062_1357.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE000511 Genomic DNA. Translation: AAD08339.1 .
    PIRi H64681.
    RefSeqi NP_208088.1. NC_000915.1.
    YP_006935217.1. NC_018939.1.

    3D structure databases

    ProteinModelPortali P56020.
    SMRi P56020. Positions 2-120.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 85962.HP1296.

    Proteomic databases

    PRIDEi P56020.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAD08339 ; AAD08339 ; HP_1296 .
    GeneIDi 13870504.
    900282.
    KEGGi heo:C694_06695.
    hpy:HP1296.
    PATRICi 20593973. VBIHelPyl33062_1357.

    Phylogenomic databases

    eggNOGi COG0099.
    KOi K02952.
    OMAi REISINI.
    OrthoDBi EOG618R01.

    Enzyme and pathway databases

    BioCyci HPY:HP1296-MONOMER.

    Family and domain databases

    Gene3Di 4.10.910.10. 1 hit.
    HAMAPi MF_01315. Ribosomal_S13_S18.
    InterProi IPR027437. 30s_Rbsml_prot_S13_C.
    IPR001892. Ribosomal_S13.
    IPR010979. Ribosomal_S13-like_H2TH.
    IPR019980. Ribosomal_S13_bac-type.
    IPR018269. Ribosomal_S13_CS.
    [Graphical view ]
    Pfami PF00416. Ribosomal_S13. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF002134. Ribosomal_S13. 1 hit.
    SUPFAMi SSF46946. SSF46946. 1 hit.
    TIGRFAMsi TIGR03631. bact_S13. 1 hit.
    PROSITEi PS00646. RIBOSOMAL_S13_1. 1 hit.
    PS50159. RIBOSOMAL_S13_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC 700392 / 26695.

    Entry informationi

    Entry nameiRS13_HELPY
    AccessioniPrimary (citable) accession number: P56020
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 80 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Helicobacter pylori
      Helicobacter pylori (strain 26695): entries and gene names
    2. Ribosomal proteins
      Ribosomal proteins families and list of entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3