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P56020

- RS13_HELPY

UniProt

P56020 - RS13_HELPY

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Protein

30S ribosomal protein S13

Gene

rpsM

Organism
Helicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites.UniRule annotation

GO - Molecular functioni

  1. rRNA binding Source: UniProtKB-HAMAP
  2. structural constituent of ribosome Source: InterPro
  3. tRNA binding Source: UniProtKB-HAMAP

GO - Biological processi

  1. translation Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Ribonucleoprotein, Ribosomal protein

Keywords - Ligandi

RNA-binding, rRNA-binding, tRNA-binding

Enzyme and pathway databases

BioCyciHPY:HP1296-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
30S ribosomal protein S13UniRule annotation
Gene namesi
Name:rpsMUniRule annotation
Ordered Locus Names:HP_1296
OrganismiHelicobacter pylori (strain ATCC 700392 / 26695) (Campylobacter pylori)
Taxonomic identifieri85962 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeHelicobacter
ProteomesiUP000000429: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. ribosome Source: UniProtKB-KW
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 12012030S ribosomal protein S13PRO_0000132096Add
BLAST

Proteomic databases

PRIDEiP56020.

Interactioni

Subunit structurei

Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome.UniRule annotation

Protein-protein interaction databases

STRINGi85962.HP1296.

Structurei

3D structure databases

ProteinModelPortaliP56020.
SMRiP56020. Positions 2-120.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribosomal protein S13P family.UniRule annotation

Phylogenomic databases

eggNOGiCOG0099.
KOiK02952.
OMAiREISINI.
OrthoDBiEOG618R01.

Family and domain databases

Gene3Di4.10.910.10. 1 hit.
HAMAPiMF_01315. Ribosomal_S13_S18.
InterProiIPR027437. 30s_Rbsml_prot_S13_C.
IPR001892. Ribosomal_S13.
IPR010979. Ribosomal_S13-like_H2TH.
IPR019980. Ribosomal_S13_bac-type.
IPR018269. Ribosomal_S13_CS.
[Graphical view]
PfamiPF00416. Ribosomal_S13. 1 hit.
[Graphical view]
PIRSFiPIRSF002134. Ribosomal_S13. 1 hit.
SUPFAMiSSF46946. SSF46946. 1 hit.
TIGRFAMsiTIGR03631. bact_S13. 1 hit.
PROSITEiPS00646. RIBOSOMAL_S13_1. 1 hit.
PS50159. RIBOSOMAL_S13_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P56020-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MARIAGVDLP KKKRVEYALT YIYGIGLKSS REILEAVGIS FDKRVHELSE
60 70 80 90 100
DEVSSIAKKI QQSYLVEGDL RKKVQMDIKS LMDLGNYRGI RHRKGLPVRG
110 120
QTTKNNARTR KGKKKTVGSK
Length:120
Mass (Da):13,575
Last modified:November 1, 1997 - v1
Checksum:iDBD77A7416A72795
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE000511 Genomic DNA. Translation: AAD08339.1.
PIRiH64681.
RefSeqiNP_208088.1. NC_000915.1.
YP_006935217.1. NC_018939.1.

Genome annotation databases

EnsemblBacteriaiAAD08339; AAD08339; HP_1296.
GeneIDi13870504.
900282.
KEGGiheo:C694_06695.
hpy:HP1296.
PATRICi20593973. VBIHelPyl33062_1357.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE000511 Genomic DNA. Translation: AAD08339.1 .
PIRi H64681.
RefSeqi NP_208088.1. NC_000915.1.
YP_006935217.1. NC_018939.1.

3D structure databases

ProteinModelPortali P56020.
SMRi P56020. Positions 2-120.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 85962.HP1296.

Proteomic databases

PRIDEi P56020.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAD08339 ; AAD08339 ; HP_1296 .
GeneIDi 13870504.
900282.
KEGGi heo:C694_06695.
hpy:HP1296.
PATRICi 20593973. VBIHelPyl33062_1357.

Phylogenomic databases

eggNOGi COG0099.
KOi K02952.
OMAi REISINI.
OrthoDBi EOG618R01.

Enzyme and pathway databases

BioCyci HPY:HP1296-MONOMER.

Family and domain databases

Gene3Di 4.10.910.10. 1 hit.
HAMAPi MF_01315. Ribosomal_S13_S18.
InterProi IPR027437. 30s_Rbsml_prot_S13_C.
IPR001892. Ribosomal_S13.
IPR010979. Ribosomal_S13-like_H2TH.
IPR019980. Ribosomal_S13_bac-type.
IPR018269. Ribosomal_S13_CS.
[Graphical view ]
Pfami PF00416. Ribosomal_S13. 1 hit.
[Graphical view ]
PIRSFi PIRSF002134. Ribosomal_S13. 1 hit.
SUPFAMi SSF46946. SSF46946. 1 hit.
TIGRFAMsi TIGR03631. bact_S13. 1 hit.
PROSITEi PS00646. RIBOSOMAL_S13_1. 1 hit.
PS50159. RIBOSOMAL_S13_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 700392 / 26695.

Entry informationi

Entry nameiRS13_HELPY
AccessioniPrimary (citable) accession number: P56020
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: October 1, 2014
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Helicobacter pylori
    Helicobacter pylori (strain 26695): entries and gene names
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3