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P55872

- IF3_BACSU

UniProt

P55872 - IF3_BACSU

Protein

Translation initiation factor IF-3

Gene

infC

Organism
Bacillus subtilis (strain 168)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 98 (01 Oct 2014)
      Sequence version 3 (26 May 2009)
      Previous versions | rss
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    Functioni

    IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.UniRule annotation

    GO - Molecular functioni

    1. translation initiation factor activity Source: UniProtKB-KW

    Keywords - Molecular functioni

    Initiation factor

    Keywords - Biological processi

    Protein biosynthesis

    Enzyme and pathway databases

    BioCyciBSUB:BSU28870-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Translation initiation factor IF-3UniRule annotation
    Gene namesi
    Name:infCUniRule annotation
    Ordered Locus Names:BSU28870
    OrganismiBacillus subtilis (strain 168)
    Taxonomic identifieri224308 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000001570: Chromosome

    Organism-specific databases

    GenoListiBSU28870. [Micado]

    Subcellular locationi

    Cytoplasm UniRule annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Initiator methioninei1 – 11RemovedBy similarity
    Chaini2 – 173172Translation initiation factor IF-3PRO_0000177482Add
    BLAST

    Proteomic databases

    PaxDbiP55872.

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Protein-protein interaction databases

    IntActiP55872. 1 interaction.
    MINTiMINT-8366385.
    STRINGi224308.BSU28870.

    Structurei

    3D structure databases

    ProteinModelPortaliP55872.
    SMRiP55872. Positions 4-79, 84-171.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the IF-3 family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0290.
    HOGENOMiHOG000035157.
    KOiK02520.
    OMAiRANTITK.
    OrthoDBiEOG63JRGJ.
    PhylomeDBiP55872.

    Family and domain databases

    Gene3Di3.10.20.80. 1 hit.
    3.30.110.10. 1 hit.
    HAMAPiMF_00080. IF_3.
    InterProiIPR019813. Translation_initiation_fac3_CS.
    IPR001288. Translation_initiation_fac_3.
    IPR019815. Translation_initiation_fac_3_C.
    IPR019814. Translation_initiation_fac_3_N.
    [Graphical view]
    PANTHERiPTHR10938. PTHR10938. 1 hit.
    PfamiPF00707. IF3_C. 1 hit.
    PF05198. IF3_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF54364. SSF54364. 1 hit.
    SSF55200. SSF55200. 1 hit.
    TIGRFAMsiTIGR00168. infC. 1 hit.
    PROSITEiPS00938. IF3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    P55872-1 [UniParc]FASTAAdd to Basket

    « Hide

    MISKDQLVNE GIRAREVRLI GQNGDQLGIK SRQEALEIAG RANLDLVLVA    50
    ANAKPPVCRI MDYGKFRFEQ QKKEKEARKN QKIINLKEVR LSPTIDEHDF 100
    NTKLRNAIKF LEKGDKVKAS IRFKGRAITH KEIGQRVLDR FSEACAEVAT 150
    VETKPKMDGR SMFLMLAPKN EKQ 173
    Length:173
    Mass (Da):19,732
    Last modified:May 26, 2009 - v3
    Checksum:i9090760908AB0751
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z75208 Genomic DNA. Translation: CAA99616.1.
    AL009126 Genomic DNA. Translation: CAB14847.1.
    PIRiH69644.
    RefSeqiNP_390765.1. NC_000964.3.
    WP_010886591.1. NC_000964.3.

    Genome annotation databases

    EnsemblBacteriaiCAB14847; CAB14847; BSU28870.
    GeneIDi937835.
    KEGGibsu:BSU28870.
    PATRICi18977666. VBIBacSub10457_3021.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z75208 Genomic DNA. Translation: CAA99616.1 .
    AL009126 Genomic DNA. Translation: CAB14847.1 .
    PIRi H69644.
    RefSeqi NP_390765.1. NC_000964.3.
    WP_010886591.1. NC_000964.3.

    3D structure databases

    ProteinModelPortali P55872.
    SMRi P55872. Positions 4-79, 84-171.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    IntActi P55872. 1 interaction.
    MINTi MINT-8366385.
    STRINGi 224308.BSU28870.

    Proteomic databases

    PaxDbi P55872.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai CAB14847 ; CAB14847 ; BSU28870 .
    GeneIDi 937835.
    KEGGi bsu:BSU28870.
    PATRICi 18977666. VBIBacSub10457_3021.

    Organism-specific databases

    GenoListi BSU28870. [Micado ]

    Phylogenomic databases

    eggNOGi COG0290.
    HOGENOMi HOG000035157.
    KOi K02520.
    OMAi RANTITK.
    OrthoDBi EOG63JRGJ.
    PhylomeDBi P55872.

    Enzyme and pathway databases

    BioCyci BSUB:BSU28870-MONOMER.

    Family and domain databases

    Gene3Di 3.10.20.80. 1 hit.
    3.30.110.10. 1 hit.
    HAMAPi MF_00080. IF_3.
    InterProi IPR019813. Translation_initiation_fac3_CS.
    IPR001288. Translation_initiation_fac_3.
    IPR019815. Translation_initiation_fac_3_C.
    IPR019814. Translation_initiation_fac_3_N.
    [Graphical view ]
    PANTHERi PTHR10938. PTHR10938. 1 hit.
    Pfami PF00707. IF3_C. 1 hit.
    PF05198. IF3_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54364. SSF54364. 1 hit.
    SSF55200. SSF55200. 1 hit.
    TIGRFAMsi TIGR00168. infC. 1 hit.
    PROSITEi PS00938. IF3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The dnaB-pheA (256 degrees-240 degrees) region of the Bacillus subtilis chromosome containing genes responsible for stress responses, the utilization of plant cell walls and primary metabolism."
      Wipat A., Carter N., Brignell C.S., Guy J.B., Piper K., Sanders J., Emmerson P.T., Harwood C.R.
      Microbiology 142:3067-3078(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
      Strain: 168.
    2. "The complete genome sequence of the Gram-positive bacterium Bacillus subtilis."
      Kunst F., Ogasawara N., Moszer I., Albertini A.M., Alloni G., Azevedo V., Bertero M.G., Bessieres P., Bolotin A., Borchert S., Borriss R., Boursier L., Brans A., Braun M., Brignell S.C., Bron S., Brouillet S., Bruschi C.V.
      , Caldwell B., Capuano V., Carter N.M., Choi S.-K., Codani J.-J., Connerton I.F., Cummings N.J., Daniel R.A., Denizot F., Devine K.M., Duesterhoeft A., Ehrlich S.D., Emmerson P.T., Entian K.-D., Errington J., Fabret C., Ferrari E., Foulger D., Fritz C., Fujita M., Fujita Y., Fuma S., Galizzi A., Galleron N., Ghim S.-Y., Glaser P., Goffeau A., Golightly E.J., Grandi G., Guiseppi G., Guy B.J., Haga K., Haiech J., Harwood C.R., Henaut A., Hilbert H., Holsappel S., Hosono S., Hullo M.-F., Itaya M., Jones L.-M., Joris B., Karamata D., Kasahara Y., Klaerr-Blanchard M., Klein C., Kobayashi Y., Koetter P., Koningstein G., Krogh S., Kumano M., Kurita K., Lapidus A., Lardinois S., Lauber J., Lazarevic V., Lee S.-M., Levine A., Liu H., Masuda S., Mauel C., Medigue C., Medina N., Mellado R.P., Mizuno M., Moestl D., Nakai S., Noback M., Noone D., O'Reilly M., Ogawa K., Ogiwara A., Oudega B., Park S.-H., Parro V., Pohl T.M., Portetelle D., Porwollik S., Prescott A.M., Presecan E., Pujic P., Purnelle B., Rapoport G., Rey M., Reynolds S., Rieger M., Rivolta C., Rocha E., Roche B., Rose M., Sadaie Y., Sato T., Scanlan E., Schleich S., Schroeter R., Scoffone F., Sekiguchi J., Sekowska A., Seror S.J., Serror P., Shin B.-S., Soldo B., Sorokin A., Tacconi E., Takagi T., Takahashi H., Takemaru K., Takeuchi M., Tamakoshi A., Tanaka T., Terpstra P., Tognoni A., Tosato V., Uchiyama S., Vandenbol M., Vannier F., Vassarotti A., Viari A., Wambutt R., Wedler E., Wedler H., Weitzenegger T., Winters P., Wipat A., Yamamoto H., Yamane K., Yasumoto K., Yata K., Yoshida K., Yoshikawa H.-F., Zumstein E., Yoshikawa H., Danchin A.
      Nature 390:249-256(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: 168.

    Entry informationi

    Entry nameiIF3_BACSU
    AccessioniPrimary (citable) accession number: P55872
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: May 26, 2009
    Last modified: October 1, 2014
    This is version 98 of the entry and version 3 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Bacillus subtilis
      Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
    2. Translation initiation factors
      List of translation initiation factor entries
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3