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Protein

40S ribosomal protein S20

Gene

RpS20

Organism
Drosophila melanogaster (Fruit fly)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • RNA binding Source: InterPro
  • structural constituent of ribosome Source: FlyBase

GO - Biological processi

  • cytoplasmic translation Source: FlyBase
  • translation Source: UniProtKB

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-DME-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-DME-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-DME-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-DME-72649. Translation initiation complex formation.
R-DME-72689. Formation of a pool of free 40S subunits.
R-DME-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-DME-72702. Ribosomal scanning and start codon recognition.
R-DME-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-DME-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-DME-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S20
Gene namesi
Name:RpS20
ORF Names:CG15693
OrganismiDrosophila melanogaster (Fruit fly)
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
Proteomesi
  • UP000000803 Componenti: Chromosome 3R

Organism-specific databases

FlyBaseiFBgn0019936. RpS20.

Subcellular locationi

GO - Cellular componenti

  • cytosolic small ribosomal subunit Source: FlyBase
  • small ribosomal subunit Source: UniProtKB

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001466871 – 12040S ribosomal protein S20Add BLAST120

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei16Phosphoserine1 Publication1
Modified residuei18Phosphoserine1 Publication1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiP55828.
PRIDEiP55828.

PTM databases

iPTMnetiP55828.

Expressioni

Tissue specificityi

Expressed ubiquitously in embryos, highest expression is in the midgut.1 Publication

Gene expression databases

BgeeiFBgn0019936.
GenevisibleiP55828. DM.

Interactioni

Protein-protein interaction databases

BioGridi67437. 40 interactors.
DIPiDIP-18789N.
IntActiP55828. 8 interactors.
MINTiMINT-743882.
STRINGi7227.FBpp0083371.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V6Welectron microscopy6.00AU1-120[»]
ProteinModelPortaliP55828.
SMRiP55828.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0900. Eukaryota.
COG0051. LUCA.
GeneTreeiENSGT00390000003248.
InParanoidiP55828.
KOiK02969.
OMAiWDRYELK.
OrthoDBiEOG091G0VNB.
PhylomeDBiP55828.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10. 1 hit.
InterProiView protein in InterPro
IPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
IPR005729. Ribosomal_S10_euk/arc.
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiView protein in Pfam
PF00338. Ribosomal_S10. 1 hit.
PRINTSiPR00971. RIBOSOMALS10.
SMARTiView protein in SMART
SM01403. Ribosomal_S10. 1 hit.
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01046. uS10_euk_arch. 1 hit.
PROSITEiView protein in PROSITE
PS00361. RIBOSOMAL_S10. 1 hit.

Sequencei

Sequence statusi: Complete.

P55828-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAAPKDIEK PHVGDSASVH RIRITLTSRN VRSLENVCRD LINGAKNQNL
60 70 80 90 100
RVKGPVRMPT KTLRITTRKT PCGEGSKTWD RFQMRIHKRI IDLHSPSEIV
110 120
KKITSINIEP GVEVEVTIAN
Length:120
Mass (Da):13,488
Last modified:November 1, 1997 - v1
Checksum:i8810A345CA22CF04
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti21R → C in AAL48975 (PubMed:12537569).Curated1
Sequence conflicti53K → E in AAL48975 (PubMed:12537569).Curated1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y11119 mRNA. Translation: CAA72004.1.
AE014297 Genomic DNA. Translation: AAF55809.1.
AY071353 mRNA. Translation: AAL48975.1.
AY071742 mRNA. Translation: AAL49364.1.
RefSeqiNP_524421.1. NM_079697.3.
UniGeneiDm.2391.

Genome annotation databases

EnsemblMetazoaiFBtr0083964; FBpp0083371; FBgn0019936.
GeneIDi42464.
KEGGidme:Dmel_CG15693.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Y11119 mRNA. Translation: CAA72004.1.
AE014297 Genomic DNA. Translation: AAF55809.1.
AY071353 mRNA. Translation: AAL48975.1.
AY071742 mRNA. Translation: AAL49364.1.
RefSeqiNP_524421.1. NM_079697.3.
UniGeneiDm.2391.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4V6Welectron microscopy6.00AU1-120[»]
ProteinModelPortaliP55828.
SMRiP55828.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi67437. 40 interactors.
DIPiDIP-18789N.
IntActiP55828. 8 interactors.
MINTiMINT-743882.
STRINGi7227.FBpp0083371.

PTM databases

iPTMnetiP55828.

Proteomic databases

PaxDbiP55828.
PRIDEiP55828.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiFBtr0083964; FBpp0083371; FBgn0019936.
GeneIDi42464.
KEGGidme:Dmel_CG15693.

Organism-specific databases

CTDi6224.
FlyBaseiFBgn0019936. RpS20.

Phylogenomic databases

eggNOGiKOG0900. Eukaryota.
COG0051. LUCA.
GeneTreeiENSGT00390000003248.
InParanoidiP55828.
KOiK02969.
OMAiWDRYELK.
OrthoDBiEOG091G0VNB.
PhylomeDBiP55828.

Enzyme and pathway databases

ReactomeiR-DME-156827. L13a-mediated translational silencing of Ceruloplasmin expression.
R-DME-1799339. SRP-dependent cotranslational protein targeting to membrane.
R-DME-6791226. Major pathway of rRNA processing in the nucleolus and cytosol.
R-DME-72649. Translation initiation complex formation.
R-DME-72689. Formation of a pool of free 40S subunits.
R-DME-72695. Formation of the ternary complex, and subsequently, the 43S complex.
R-DME-72702. Ribosomal scanning and start codon recognition.
R-DME-72706. GTP hydrolysis and joining of the 60S ribosomal subunit.
R-DME-975956. Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC).
R-DME-975957. Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC).

Miscellaneous databases

ChiTaRSiRpS20. fly.
GenomeRNAii42464.
PROiPR:P55828.

Gene expression databases

BgeeiFBgn0019936.
GenevisibleiP55828. DM.

Family and domain databases

Gene3Di3.30.70.600. 1 hit.
HAMAPiMF_00508. Ribosomal_S10. 1 hit.
InterProiView protein in InterPro
IPR001848. Ribosomal_S10.
IPR018268. Ribosomal_S10_CS.
IPR027486. Ribosomal_S10_dom.
IPR005729. Ribosomal_S10_euk/arc.
PANTHERiPTHR11700. PTHR11700. 1 hit.
PfamiView protein in Pfam
PF00338. Ribosomal_S10. 1 hit.
PRINTSiPR00971. RIBOSOMALS10.
SMARTiView protein in SMART
SM01403. Ribosomal_S10. 1 hit.
SUPFAMiSSF54999. SSF54999. 1 hit.
TIGRFAMsiTIGR01046. uS10_euk_arch. 1 hit.
PROSITEiView protein in PROSITE
PS00361. RIBOSOMAL_S10. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiRS20_DROME
AccessioniPrimary (citable) accession number: P55828
Secondary accession number(s): Q8SYS0, Q9VDI4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: May 10, 2017
This is version 126 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programDrosophila annotation project

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Drosophila
    Drosophila: entries, gene names and cross-references to FlyBase
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
  4. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.