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Protein

Inner membrane protein YgaP

Gene

ygaP

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • thiosulfate sulfurtransferase activity Source: EcoCyc

Enzyme and pathway databases

BioCyciEcoCyc:G7398-MONOMER
MetaCyc:G7398-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YgaP
Gene namesi
Name:ygaP
Ordered Locus Names:b2668, JW2643
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13288 ygaP

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 116CytoplasmicSequence analysisAdd BLAST116
Transmembranei117 – 137HelicalSequence analysisAdd BLAST21
Transmembranei138 – 158HelicalSequence analysisAdd BLAST21
Topological domaini159 – 174CytoplasmicSequence analysisAdd BLAST16

GO - Cellular componenti

  • integral component of plasma membrane Source: EcoCyc

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001693001 – 174Inner membrane protein YgaPAdd BLAST174

Proteomic databases

PaxDbiP55734
PRIDEiP55734

Interactioni

Protein-protein interaction databases

BioGridi4262267, 14 interactors
IntActiP55734, 4 interactors
STRINGi316385.ECDH10B_2835

Structurei

Secondary structure

1174
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 6Combined sources3
Helixi8 – 16Combined sources9
Beta strandi20 – 23Combined sources4
Helixi27 – 32Combined sources6
Beta strandi36 – 38Combined sources3
Helixi43 – 49Combined sources7
Helixi53 – 55Combined sources3
Beta strandi58 – 63Combined sources6
Beta strandi65 – 67Combined sources3
Helixi68 – 72Combined sources5
Helixi74 – 80Combined sources7
Turni81 – 83Combined sources3
Beta strandi84 – 89Combined sources6
Helixi92 – 98Combined sources7
Beta strandi104 – 106Combined sources3
Helixi116 – 137Combined sources22
Turni138 – 141Combined sources4
Beta strandi142 – 145Combined sources4
Helixi146 – 167Combined sources22
Helixi171 – 173Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2MOINMR-A2-109[»]
2MOLNMR-A2-109[»]
2MPNNMR-A/B107-174[»]
5HBLX-ray1.62A2-109[»]
5HBOX-ray1.66A2-109[»]
5HBPX-ray1.50A2-109[»]
5HBQX-ray1.66A2-109[»]
5HPAX-ray1.66A2-109[»]
5LAMNMR-A2-109[»]
5LAONMR-A2-109[»]
ProteinModelPortaliP55734
SMRiP55734
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini15 – 105RhodanesePROSITE-ProRule annotationAdd BLAST91

Sequence similaritiesi

To Synechocystis PCC 6803 slr1261.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108V62 Bacteria
COG0607 LUCA
HOGENOMiHOG000252161
InParanoidiP55734
OMAiTCAMGML
PhylomeDBiP55734

Family and domain databases

Gene3Di3.40.250.10, 1 hit
InterProiView protein in InterPro
IPR021309 DUF2892
IPR001763 Rhodanese-like_dom
IPR036873 Rhodanese-like_dom_sf
PfamiView protein in Pfam
PF11127 DUF2892, 1 hit
PF00581 Rhodanese, 1 hit
SMARTiView protein in SMART
SM00450 RHOD, 1 hit
SUPFAMiSSF52821 SSF52821, 1 hit
PROSITEiView protein in PROSITE
PS50206 RHODANESE_3, 1 hit

Sequencei

Sequence statusi: Complete.

P55734-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALTTISPHD AQELIARGAK LIDIRDADEY LREHIPEADL APLSVLEQSG
60 70 80 90 100
LPAKLRHEQI IFHCQAGKRT SNNADKLAAI AAPAEIFLLE DGIDGWKKAG
110 120 130 140 150
LPVAVNKSQP LPLMRQVQIA AGGLILIGVV LGYTVNSGFF LLSGFVGAGL
160 170
LFAGISGFCG MARLLDKMPW NQRA
Length:174
Mass (Da):18,639
Last modified:November 1, 1997 - v1
Checksum:i8B8C923A6F845E1E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA Translation: AAC75715.1
AP009048 Genomic DNA Translation: BAE76780.1
X69210 Genomic DNA No translation available.
PIRiE65046
RefSeqiNP_417154.1, NC_000913.3
WP_001229442.1, NZ_LN832404.1

Genome annotation databases

EnsemblBacteriaiAAC75715; AAC75715; b2668
BAE76780; BAE76780; BAE76780
GeneIDi947135
KEGGiecj:JW2643
eco:b2668
PATRICifig|1411691.4.peg.4073

Similar proteinsi

Entry informationi

Entry nameiYGAP_ECOLI
AccessioniPrimary (citable) accession number: P55734
Secondary accession number(s): P76625, Q2MAC6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: March 28, 2018
This is version 116 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

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