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Protein

Inner membrane protein YgaP

Gene

ygaP

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • thiosulfate sulfurtransferase activity Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7398-MONOMER.
ECOL316407:JW2643-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YgaP
Gene namesi
Name:ygaP
Ordered Locus Names:b2668, JW2643
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13288. ygaP.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 116116CytoplasmicSequence analysisAdd
BLAST
Transmembranei117 – 13721HelicalSequence analysisAdd
BLAST
Transmembranei138 – 15821HelicalSequence analysisAdd
BLAST
Topological domaini159 – 17416CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

  • integral component of plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 174174Inner membrane protein YgaPPRO_0000169300Add
BLAST

Proteomic databases

PaxDbiP55734.

Interactioni

Protein-protein interaction databases

BioGridi4262267. 14 interactions.
IntActiP55734. 4 interactions.
STRINGi511145.b2668.

Structurei

Secondary structure

1
174
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Helixi8 – 147Combined sources
Turni15 – 173Combined sources
Beta strandi20 – 234Combined sources
Helixi28 – 325Combined sources
Helixi43 – 464Combined sources
Helixi53 – 553Combined sources
Beta strandi58 – 625Combined sources
Beta strandi65 – 673Combined sources
Helixi71 – 733Combined sources
Helixi74 – 807Combined sources
Turni81 – 833Combined sources
Helixi94 – 996Combined sources
Beta strandi104 – 1063Combined sources
Helixi116 – 13722Combined sources
Turni138 – 1414Combined sources
Beta strandi142 – 1454Combined sources
Helixi146 – 16722Combined sources
Helixi171 – 1733Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2MOINMR-A2-109[»]
2MOLNMR-A2-109[»]
2MPNNMR-A/B107-174[»]
ProteinModelPortaliP55734.
SMRiP55734. Positions 2-174.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini15 – 10591RhodanesePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 rhodanese domain.PROSITE-ProRule annotation
To Synechocystis PCC 6803 slr1261.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108V62. Bacteria.
COG0607. LUCA.
HOGENOMiHOG000252161.
InParanoidiP55734.
OMAiYAREHIP.
OrthoDBiEOG69GZQ4.
PhylomeDBiP55734.

Family and domain databases

Gene3Di3.40.250.10. 1 hit.
InterProiIPR021309. DUF2892.
IPR001763. Rhodanese-like_dom.
[Graphical view]
PfamiPF11127. DUF2892. 1 hit.
PF00581. Rhodanese. 1 hit.
[Graphical view]
SMARTiSM00450. RHOD. 1 hit.
[Graphical view]
SUPFAMiSSF52821. SSF52821. 1 hit.
PROSITEiPS50206. RHODANESE_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55734-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALTTISPHD AQELIARGAK LIDIRDADEY LREHIPEADL APLSVLEQSG
60 70 80 90 100
LPAKLRHEQI IFHCQAGKRT SNNADKLAAI AAPAEIFLLE DGIDGWKKAG
110 120 130 140 150
LPVAVNKSQP LPLMRQVQIA AGGLILIGVV LGYTVNSGFF LLSGFVGAGL
160 170
LFAGISGFCG MARLLDKMPW NQRA
Length:174
Mass (Da):18,639
Last modified:November 1, 1997 - v1
Checksum:i8B8C923A6F845E1E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75715.1.
AP009048 Genomic DNA. Translation: BAE76780.1.
X69210 Genomic DNA. No translation available.
PIRiE65046.
RefSeqiNP_417154.1. NC_000913.3.
WP_001229442.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75715; AAC75715; b2668.
BAE76780; BAE76780; BAE76780.
GeneIDi947135.
KEGGiecj:JW2643.
eco:b2668.
PATRICi32120726. VBIEscCol129921_2760.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75715.1.
AP009048 Genomic DNA. Translation: BAE76780.1.
X69210 Genomic DNA. No translation available.
PIRiE65046.
RefSeqiNP_417154.1. NC_000913.3.
WP_001229442.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
2MOINMR-A2-109[»]
2MOLNMR-A2-109[»]
2MPNNMR-A/B107-174[»]
ProteinModelPortaliP55734.
SMRiP55734. Positions 2-174.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262267. 14 interactions.
IntActiP55734. 4 interactions.
STRINGi511145.b2668.

Proteomic databases

PaxDbiP55734.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75715; AAC75715; b2668.
BAE76780; BAE76780; BAE76780.
GeneIDi947135.
KEGGiecj:JW2643.
eco:b2668.
PATRICi32120726. VBIEscCol129921_2760.

Organism-specific databases

EchoBASEiEB3073.
EcoGeneiEG13288. ygaP.

Phylogenomic databases

eggNOGiENOG4108V62. Bacteria.
COG0607. LUCA.
HOGENOMiHOG000252161.
InParanoidiP55734.
OMAiYAREHIP.
OrthoDBiEOG69GZQ4.
PhylomeDBiP55734.

Enzyme and pathway databases

BioCyciEcoCyc:G7398-MONOMER.
ECOL316407:JW2643-MONOMER.

Miscellaneous databases

PROiP55734.

Family and domain databases

Gene3Di3.40.250.10. 1 hit.
InterProiIPR021309. DUF2892.
IPR001763. Rhodanese-like_dom.
[Graphical view]
PfamiPF11127. DUF2892. 1 hit.
PF00581. Rhodanese. 1 hit.
[Graphical view]
SMARTiSM00450. RHOD. 1 hit.
[Graphical view]
SUPFAMiSSF52821. SSF52821. 1 hit.
PROSITEiPS50206. RHODANESE_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / MG1655 / ATCC 47076.
  2. "Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110."
    Hayashi K., Morooka N., Yamamoto Y., Fujita K., Isono K., Choi S., Ohtsubo E., Baba T., Wanner B.L., Mori H., Horiuchi T.
    Mol. Syst. Biol. 2:E1-E5(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: K12 / W3110 / ATCC 27325 / DSM 5911.
  3. "Nucleotide sequence of a newly-identified Escherichia coli gene, stpA, encoding an H-NS-like protein."
    Zhang A., Belfort M.
    Nucleic Acids Res. 20:6735-6735(1992) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 41-174.
    Strain: K12.
  4. Rudd K.E.
    Unpublished observations (JUN-1996)
    Cited for: IDENTIFICATION.
  5. "Global topology analysis of the Escherichia coli inner membrane proteome."
    Daley D.O., Rapp M., Granseth E., Melen K., Drew D., von Heijne G.
    Science 308:1321-1323(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: TOPOLOGY [LARGE SCALE ANALYSIS].
    Strain: K12 / MG1655 / ATCC 47076.

Entry informationi

Entry nameiYGAP_ECOLI
AccessioniPrimary (citable) accession number: P55734
Secondary accession number(s): P76625, Q2MAC6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: January 20, 2016
This is version 106 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.