Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Inner membrane protein YgaP

Gene

ygaP

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

  • thiosulfate sulfurtransferase activity Source: EcoCyc
Complete GO annotation...

Enzyme and pathway databases

BioCyciEcoCyc:G7398-MONOMER.
ECOL316407:JW2643-MONOMER.
MetaCyc:G7398-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Inner membrane protein YgaP
Gene namesi
Name:ygaP
Ordered Locus Names:b2668, JW2643
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13288. ygaP.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 116CytoplasmicSequence analysisAdd BLAST116
Transmembranei117 – 137HelicalSequence analysisAdd BLAST21
Transmembranei138 – 158HelicalSequence analysisAdd BLAST21
Topological domaini159 – 174CytoplasmicSequence analysisAdd BLAST16

GO - Cellular componenti

  • integral component of plasma membrane Source: EcoCyc
Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001693001 – 174Inner membrane protein YgaPAdd BLAST174

Proteomic databases

PaxDbiP55734.
PRIDEiP55734.

Interactioni

Protein-protein interaction databases

BioGridi4262267. 14 interactors.
IntActiP55734. 4 interactors.
STRINGi511145.b2668.

Structurei

Secondary structure

1174
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi4 – 6Combined sources3
Helixi8 – 16Combined sources9
Beta strandi20 – 23Combined sources4
Helixi27 – 32Combined sources6
Beta strandi36 – 38Combined sources3
Helixi43 – 49Combined sources7
Helixi53 – 55Combined sources3
Beta strandi58 – 63Combined sources6
Beta strandi65 – 67Combined sources3
Helixi68 – 72Combined sources5
Helixi74 – 80Combined sources7
Turni81 – 83Combined sources3
Beta strandi84 – 89Combined sources6
Helixi92 – 98Combined sources7
Beta strandi104 – 106Combined sources3
Helixi116 – 137Combined sources22
Turni138 – 141Combined sources4
Beta strandi142 – 145Combined sources4
Helixi146 – 167Combined sources22
Helixi171 – 173Combined sources3

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2MOINMR-A2-109[»]
2MOLNMR-A2-109[»]
2MPNNMR-A/B107-174[»]
5HBLX-ray1.62A2-109[»]
5HBOX-ray1.66A2-109[»]
5HBPX-ray1.50A2-109[»]
5HBQX-ray1.66A2-109[»]
5LAMNMR-A2-109[»]
5LAONMR-A2-109[»]
ProteinModelPortaliP55734.
SMRiP55734.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini15 – 105RhodanesePROSITE-ProRule annotationAdd BLAST91

Sequence similaritiesi

Contains 1 rhodanese domain.PROSITE-ProRule annotation
To Synechocystis PCC 6803 slr1261.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4108V62. Bacteria.
COG0607. LUCA.
HOGENOMiHOG000252161.
InParanoidiP55734.
OMAiYAREHIP.
PhylomeDBiP55734.

Family and domain databases

Gene3Di3.40.250.10. 1 hit.
InterProiIPR021309. DUF2892.
IPR001763. Rhodanese-like_dom.
[Graphical view]
PfamiPF11127. DUF2892. 1 hit.
PF00581. Rhodanese. 1 hit.
[Graphical view]
SMARTiSM00450. RHOD. 1 hit.
[Graphical view]
SUPFAMiSSF52821. SSF52821. 1 hit.
PROSITEiPS50206. RHODANESE_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55734-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALTTISPHD AQELIARGAK LIDIRDADEY LREHIPEADL APLSVLEQSG
60 70 80 90 100
LPAKLRHEQI IFHCQAGKRT SNNADKLAAI AAPAEIFLLE DGIDGWKKAG
110 120 130 140 150
LPVAVNKSQP LPLMRQVQIA AGGLILIGVV LGYTVNSGFF LLSGFVGAGL
160 170
LFAGISGFCG MARLLDKMPW NQRA
Length:174
Mass (Da):18,639
Last modified:November 1, 1997 - v1
Checksum:i8B8C923A6F845E1E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75715.1.
AP009048 Genomic DNA. Translation: BAE76780.1.
X69210 Genomic DNA. No translation available.
PIRiE65046.
RefSeqiNP_417154.1. NC_000913.3.
WP_001229442.1. NZ_LN832404.1.

Genome annotation databases

EnsemblBacteriaiAAC75715; AAC75715; b2668.
BAE76780; BAE76780; BAE76780.
GeneIDi947135.
KEGGiecj:JW2643.
eco:b2668.
PATRICi32120726. VBIEscCol129921_2760.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00096 Genomic DNA. Translation: AAC75715.1.
AP009048 Genomic DNA. Translation: BAE76780.1.
X69210 Genomic DNA. No translation available.
PIRiE65046.
RefSeqiNP_417154.1. NC_000913.3.
WP_001229442.1. NZ_LN832404.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2MOINMR-A2-109[»]
2MOLNMR-A2-109[»]
2MPNNMR-A/B107-174[»]
5HBLX-ray1.62A2-109[»]
5HBOX-ray1.66A2-109[»]
5HBPX-ray1.50A2-109[»]
5HBQX-ray1.66A2-109[»]
5LAMNMR-A2-109[»]
5LAONMR-A2-109[»]
ProteinModelPortaliP55734.
SMRiP55734.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262267. 14 interactors.
IntActiP55734. 4 interactors.
STRINGi511145.b2668.

Proteomic databases

PaxDbiP55734.
PRIDEiP55734.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAC75715; AAC75715; b2668.
BAE76780; BAE76780; BAE76780.
GeneIDi947135.
KEGGiecj:JW2643.
eco:b2668.
PATRICi32120726. VBIEscCol129921_2760.

Organism-specific databases

EchoBASEiEB3073.
EcoGeneiEG13288. ygaP.

Phylogenomic databases

eggNOGiENOG4108V62. Bacteria.
COG0607. LUCA.
HOGENOMiHOG000252161.
InParanoidiP55734.
OMAiYAREHIP.
PhylomeDBiP55734.

Enzyme and pathway databases

BioCyciEcoCyc:G7398-MONOMER.
ECOL316407:JW2643-MONOMER.
MetaCyc:G7398-MONOMER.

Miscellaneous databases

PROiP55734.

Family and domain databases

Gene3Di3.40.250.10. 1 hit.
InterProiIPR021309. DUF2892.
IPR001763. Rhodanese-like_dom.
[Graphical view]
PfamiPF11127. DUF2892. 1 hit.
PF00581. Rhodanese. 1 hit.
[Graphical view]
SMARTiSM00450. RHOD. 1 hit.
[Graphical view]
SUPFAMiSSF52821. SSF52821. 1 hit.
PROSITEiPS50206. RHODANESE_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiYGAP_ECOLI
AccessioniPrimary (citable) accession number: P55734
Secondary accession number(s): P76625, Q2MAC6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 30, 2016
This is version 110 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.