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P55726 (Y4YR_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 74. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable translocation protein y4yR
Gene names
Ordered Locus Names:NGR_a00530
ORF Names:y4yR
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length697 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Could be involved in the secretion of an unknown factor.

Subcellular location

Cell inner membrane; Multi-pass membrane protein Potential.

Sequence similarities

Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.

Ontologies

Keywords
   Biological processTransport
   Cellular componentCell inner membrane
Cell membrane
Membrane
   DomainTransmembrane
Transmembrane helix
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Biological_processprotein secretion

Inferred from electronic annotation. Source: InterPro

   Cellular_componentintegral component of membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 697697Probable translocation protein y4yR
PRO_0000190035

Regions

Transmembrane20 – 4021Helical; Potential
Transmembrane42 – 6221Helical; Potential
Transmembrane67 – 8721Helical; Potential
Transmembrane107 – 12721Helical; Potential
Transmembrane200 – 22021Helical; Potential
Transmembrane235 – 25521Helical; Potential
Transmembrane293 – 31321Helical; Potential
Transmembrane372 – 39221Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
P55726 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 2A439586CC79BF32

FASTA69775,526
        10         20         30         40         50         60 
MANALRRFTE YAPANPDLMV ALMLLLAVSM MVMPIPVMAV DALIGFNMGL AVLLLMAALY 

        70         80         90        100        110        120 
VSTPLDFSSL PGVILLSTVF RLALTVATTR LILAEGEAGS IIHTFGSFVI SGNIVVGFVI 

       130        140        150        160        170        180 
FLVVTMVQFM VLAKGAERVA EVAARFTLDA LPGKQMAIDA ELRNGHIDAD ESRRRRAALE 

       190        200        210        220        230        240 
KESKLYGAMD GAMKFVKGDS IAGLVVICIN MLGGISIGLL SKGMSFAQVL HHYTLLTIGD 

       250        260        270        280        290        300 
ALISQIPALL LSITAATMVT RVTGASKLNL GEDIANQLTA STRALRLAAC VLVAMGFVPG 

       310        320        330        340        350        360 
FPLPVFFMLA AVFAAASFVK GDVLDADKVD ATTVTPAESQ TPNVAAQPNP IGVFLAPSLT 

       370        380        390        400        410        420 
NAIDQVELRQ HIARISQLVS ADLGIIVPPI PVDVDQQLPE SQFRIDVEGV PVEQDLINPA 

       430        440        450        460        470        480 
QLSLADDLKK IESSGIPFRH DPETHRIWVE QSHEPALKAA GIRHHSPSEL LAMRVHATLT 

       490        500        510        520        530        540 
CHAPRLVGIQ ETRQLLGRME QEYSDLVKEV LRTTPIPRIA DVLRRLLGEG IPIRNTRLVL 

       550        560        570        580        590        600 
EALAEWSERE QNVALLTEHV RSGMKRQICH RYGRHGVLPA FVMERETEDV VRCAVRETAA 

       610        620        630        640        650        660 
GPYLALEDRQ SEALLSQMRQ VFSSTAPGQT RPIVLTSMDV RRFVRGFLTR NGIELAVLSY 

       670        680        690 
QDLASDFKIQ PVGSIRLPPS NGTSGEPRSI RPSATTG 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB91957.1.
RefSeqNP_444170.1. NC_000914.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a00530.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91957; AAB91957; NGR_a00530.
GeneID962238.
KEGGrhi:NGR_a00530.
PATRIC32300835. VBIRhiSp122450_0053.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG4789.
HOGENOMHOG000254015.
KOK03230.
OMAPIPRIAD.
OrthoDBEOG6RZB0J.
ProtClustDBCLSK506585.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6104-MONOMER.

Family and domain databases

InterProIPR025505. FHIPEP_CS.
IPR001712. T3SS_FHIPEP.
IPR006302. T3SS_HrcV.
[Graphical view]
PfamPF00771. FHIPEP. 1 hit.
[Graphical view]
PIRSFPIRSF005419. FlhA. 1 hit.
PRINTSPR00949. TYPE3IMAPROT.
TIGRFAMsTIGR01399. hrcV. 1 hit.
PROSITEPS00994. FHIPEP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY4YR_RHISN
AccessionPrimary (citable) accession number: P55726
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: February 19, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names