P55726 (Y4YR_RHISN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Probable translocation protein y4yR

Gene names

Ordered Locus Names:	NGR_a00530
ORF Names:	y4yR

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium › Sinorhizobium fredii group › Rhizobium fredii

Protein attributes

Sequence length	697 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Could be involved in the secretion of an unknown factor.
Subcellular location	Cell inner membrane; Multi-pass membrane protein Potential.
Sequence similarities	Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.

Ontologies

Keywords
Biological process	Transport
Cellular component	Cell inner membrane Cell membrane Membrane
Domain	Transmembrane Transmembrane helix
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
Biological_process	protein secretion Inferred from electronic annotation. Source: InterPro
Cellular_component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 697	697	Probable translocation protein y4yR		PRO_0000190035
Regions
	Transmembrane	20 – 40	21	Helical; Potential
	Transmembrane	42 – 62	21	Helical; Potential
	Transmembrane	67 – 87	21	Helical; Potential
	Transmembrane	107 – 127	21	Helical; Potential
	Transmembrane	200 – 220	21	Helical; Potential
	Transmembrane	235 – 255	21	Helical; Potential
	Transmembrane	293 – 313	21	Helical; Potential
	Transmembrane	372 – 392	21	Helical; Potential

Sequences

	Sequence		Length	Mass (Da)
	P55726 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 2A439586CC79BF32	FASTA	697	75,526
	10 20 30 40 50 60 MANALRRFTE YAPANPDLMV ALMLLLAVSM MVMPIPVMAV DALIGFNMGL AVLLLMAALY 70 80 90 100 110 120 VSTPLDFSSL PGVILLSTVF RLALTVATTR LILAEGEAGS IIHTFGSFVI SGNIVVGFVI 130 140 150 160 170 180 FLVVTMVQFM VLAKGAERVA EVAARFTLDA LPGKQMAIDA ELRNGHIDAD ESRRRRAALE 190 200 210 220 230 240 KESKLYGAMD GAMKFVKGDS IAGLVVICIN MLGGISIGLL SKGMSFAQVL HHYTLLTIGD 250 260 270 280 290 300 ALISQIPALL LSITAATMVT RVTGASKLNL GEDIANQLTA STRALRLAAC VLVAMGFVPG 310 320 330 340 350 360 FPLPVFFMLA AVFAAASFVK GDVLDADKVD ATTVTPAESQ TPNVAAQPNP IGVFLAPSLT 370 380 390 400 410 420 NAIDQVELRQ HIARISQLVS ADLGIIVPPI PVDVDQQLPE SQFRIDVEGV PVEQDLINPA 430 440 450 460 470 480 QLSLADDLKK IESSGIPFRH DPETHRIWVE QSHEPALKAA GIRHHSPSEL LAMRVHATLT 490 500 510 520 530 540 CHAPRLVGIQ ETRQLLGRME QEYSDLVKEV LRTTPIPRIA DVLRRLLGEG IPIRNTRLVL 550 560 570 580 590 600 EALAEWSERE QNVALLTEHV RSGMKRQICH RYGRHGVLPA FVMERETEDV VRCAVRETAA 610 620 630 640 650 660 GPYLALEDRQ SEALLSQMRQ VFSSTAPGQT RPIVLTSMDV RRFVRGFLTR NGIELAVLSY 670 680 690 QDLASDFKIQ PVGSIRLPPS NGTSGEPRSI RPSATTG

References

[1]

"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

[2]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U00090 Genomic DNA. Translation: AAB91957.1.
RefSeq	NP_444170.1. NC_000914.2.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	394.NGR_a00530.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAB91957; AAB91957; NGR_a00530.
GeneID	962238.
KEGG	rhi:NGR_a00530.
PATRIC	32300835. VBIRhiSp122450_0053.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG4789.
HOGENOM	HOG000254015.
KO	K03230.
OMA	PIPRIAD.
ProtClustDB	CLSK506585.
Family and domain databases
InterPro	IPR025505. FHIPEP_CS. IPR001712. T3SS_FHIPEP. IPR006302. T3SS_HrcV. [Graphical view]
Pfam	PF00771. FHIPEP. 1 hit. [Graphical view]
PIRSF	PIRSF005419. FlhA. 1 hit.
PRINTS	PR00949. TYPE3IMAPROT.
TIGRFAMs	TIGR01399. hrcV. 1 hit.
PROSITE	PS00994. FHIPEP. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y4YR_RHISN

Accession

Primary (citable) accession number: P55726

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	May 1, 2013
This is version 71 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program