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Protein

Probable translocation protein y4yR

Gene

NGR_a00530

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Could be involved in the secretion of an unknown factor.

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-5464-MONOMER.
SFRE394:GBYN-6104-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable translocation protein y4yR
Gene namesi
Ordered Locus Names:NGR_a00530
ORF Names:y4yR
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054 Componenti: Plasmid sym pNGR234a

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei20 – 4021HelicalSequence AnalysisAdd
BLAST
Transmembranei42 – 6221HelicalSequence AnalysisAdd
BLAST
Transmembranei67 – 8721HelicalSequence AnalysisAdd
BLAST
Transmembranei107 – 12721HelicalSequence AnalysisAdd
BLAST
Transmembranei200 – 22021HelicalSequence AnalysisAdd
BLAST
Transmembranei235 – 25521HelicalSequence AnalysisAdd
BLAST
Transmembranei293 – 31321HelicalSequence AnalysisAdd
BLAST
Transmembranei372 – 39221HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 697697Probable translocation protein y4yRPRO_0000190035Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a00530.

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG4789.
HOGENOMiHOG000254015.
KOiK03230.
OMAiVTRVNNN.
OrthoDBiEOG6RZB0J.

Family and domain databases

InterProiIPR025505. FHIPEP_CS.
IPR001712. T3SS_FHIPEP.
IPR006302. T3SS_HrcV.
[Graphical view]
PfamiPF00771. FHIPEP. 1 hit.
[Graphical view]
PIRSFiPIRSF005419. FlhA. 1 hit.
PRINTSiPR00949. TYPE3IMAPROT.
TIGRFAMsiTIGR01399. hrcV. 1 hit.
PROSITEiPS00994. FHIPEP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55726-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MANALRRFTE YAPANPDLMV ALMLLLAVSM MVMPIPVMAV DALIGFNMGL
60 70 80 90 100
AVLLLMAALY VSTPLDFSSL PGVILLSTVF RLALTVATTR LILAEGEAGS
110 120 130 140 150
IIHTFGSFVI SGNIVVGFVI FLVVTMVQFM VLAKGAERVA EVAARFTLDA
160 170 180 190 200
LPGKQMAIDA ELRNGHIDAD ESRRRRAALE KESKLYGAMD GAMKFVKGDS
210 220 230 240 250
IAGLVVICIN MLGGISIGLL SKGMSFAQVL HHYTLLTIGD ALISQIPALL
260 270 280 290 300
LSITAATMVT RVTGASKLNL GEDIANQLTA STRALRLAAC VLVAMGFVPG
310 320 330 340 350
FPLPVFFMLA AVFAAASFVK GDVLDADKVD ATTVTPAESQ TPNVAAQPNP
360 370 380 390 400
IGVFLAPSLT NAIDQVELRQ HIARISQLVS ADLGIIVPPI PVDVDQQLPE
410 420 430 440 450
SQFRIDVEGV PVEQDLINPA QLSLADDLKK IESSGIPFRH DPETHRIWVE
460 470 480 490 500
QSHEPALKAA GIRHHSPSEL LAMRVHATLT CHAPRLVGIQ ETRQLLGRME
510 520 530 540 550
QEYSDLVKEV LRTTPIPRIA DVLRRLLGEG IPIRNTRLVL EALAEWSERE
560 570 580 590 600
QNVALLTEHV RSGMKRQICH RYGRHGVLPA FVMERETEDV VRCAVRETAA
610 620 630 640 650
GPYLALEDRQ SEALLSQMRQ VFSSTAPGQT RPIVLTSMDV RRFVRGFLTR
660 670 680 690
NGIELAVLSY QDLASDFKIQ PVGSIRLPPS NGTSGEPRSI RPSATTG
Length:697
Mass (Da):75,526
Last modified:November 1, 1997 - v1
Checksum:i2A439586CC79BF32
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91957.1.
RefSeqiNP_444170.1. NC_000914.2.
WP_010875094.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91957; AAB91957; NGR_a00530.
GeneIDi962238.
KEGGirhi:NGR_a00530.
PATRICi32300835. VBIRhiSp122450_0053.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91957.1.
RefSeqiNP_444170.1. NC_000914.2.
WP_010875094.1. NC_000914.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi394.NGR_a00530.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91957; AAB91957; NGR_a00530.
GeneIDi962238.
KEGGirhi:NGR_a00530.
PATRICi32300835. VBIRhiSp122450_0053.

Phylogenomic databases

eggNOGiCOG4789.
HOGENOMiHOG000254015.
KOiK03230.
OMAiVTRVNNN.
OrthoDBiEOG6RZB0J.

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-5464-MONOMER.
SFRE394:GBYN-6104-MONOMER.

Family and domain databases

InterProiIPR025505. FHIPEP_CS.
IPR001712. T3SS_FHIPEP.
IPR006302. T3SS_HrcV.
[Graphical view]
PfamiPF00771. FHIPEP. 1 hit.
[Graphical view]
PIRSFiPIRSF005419. FlhA. 1 hit.
PRINTSiPR00949. TYPE3IMAPROT.
TIGRFAMsiTIGR01399. hrcV. 1 hit.
PROSITEiPS00994. FHIPEP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4YR_RHISN
AccessioniPrimary (citable) accession number: P55726
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: April 29, 2015
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.