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P55670

- Y4UD_RHISN

UniProt

P55670 - Y4UD_RHISN

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Protein

UPF0262 protein y4uD

Gene

NGR_a01360

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 1 out of 5- Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-6458-MONOMER.
SFRE394:GBYN-6187-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0262 protein y4uDUniRule annotation
Gene namesi
Ordered Locus Names:NGR_a01360
ORF Names:y4uD
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 165165UPF0262 protein y4uDPRO_0000220333Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a01360.

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0262 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG5328.
HOGENOMiHOG000251919.
OMAiMRIRAID.
OrthoDBiEOG6DC6M8.

Family and domain databases

HAMAPiMF_00678. UPF0262.
InterProiIPR008321. UCP032146.
[Graphical view]
PfamiPF06793. UPF0262. 1 hit.
[Graphical view]
PIRSFiPIRSF032146. UCP032146. 1 hit.

Sequencei

Sequence statusi: Complete.

P55670-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTGAEFRLCD VALDCSFKTR DQRVEREQAL AVLDLLEAST FVPVGHHGGP
60 70 80 90 100
YRLKISMAAG RLVFHIADDK GAHIVSHHLS LAPFRRLLND YSRTCEGYYE
110 120 130 140 150
AMCRSNLERL QAIDMGRRGI HDEAAELLRE RLSAKVDIDK DTARRLFTLI
160
YALLARNSGH QILLN
Length:165
Mass (Da):18,677
Last modified:November 1, 1997 - v1
Checksum:i904038CE491D1696
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. No translation available.
U00090 Genomic DNA. Translation: AAB91876.1.
RefSeqiNP_444089.1. NC_000914.2.
WP_010875174.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91876; AAB91876; NGR_a01360.
GeneIDi962160.
KEGGirhi:NGR_a01360.
PATRICi32300971. VBIRhiSp122450_0121.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. No translation available.
U00090 Genomic DNA. Translation: AAB91876.1 .
RefSeqi NP_444089.1. NC_000914.2.
WP_010875174.1. NC_000914.2.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_a01360.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB91876 ; AAB91876 ; NGR_a01360 .
GeneIDi 962160.
KEGGi rhi:NGR_a01360.
PATRICi 32300971. VBIRhiSp122450_0121.

Phylogenomic databases

eggNOGi COG5328.
HOGENOMi HOG000251919.
OMAi MRIRAID.
OrthoDBi EOG6DC6M8.

Enzyme and pathway databases

BioCyci RETL1328306-WGS:GSTH-6458-MONOMER.
SFRE394:GBYN-6187-MONOMER.

Family and domain databases

HAMAPi MF_00678. UPF0262.
InterProi IPR008321. UCP032146.
[Graphical view ]
Pfami PF06793. UPF0262. 1 hit.
[Graphical view ]
PIRSFi PIRSF032146. UCP032146. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning."
    Freiberg C., Perret X., Broughton W.J., Rosenthal A.
    Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4UD_RHISN
AccessioniPrimary (citable) accession number: P55670
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 26, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

External Data

Dasty 3