P55670 (Y4UD_RHISN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
UPF0262 protein y4uD

Gene names

Ordered Locus Names:	NGR_a01360
ORF Names:	y4uD

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium › Sinorhizobium fredii group › Rhizobium fredii

Protein attributes

Sequence length	165 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the UPF0262 family.

Ontologies

Keywords
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 165	165	UPF0262 protein y4uD HAMAP-Rule MF_00678		PRO_0000220333

Sequences

	Sequence		Length	Mass (Da)
	P55670 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 904038CE491D1696	FASTA	165	18,677
	10 20 30 40 50 60 MTGAEFRLCD VALDCSFKTR DQRVEREQAL AVLDLLEAST FVPVGHHGGP YRLKISMAAG 70 80 90 100 110 120 RLVFHIADDK GAHIVSHHLS LAPFRRLLND YSRTCEGYYE AMCRSNLERL QAIDMGRRGI 130 140 150 160 HDEAAELLRE RLSAKVDIDK DTARRLFTLI YALLARNSGH QILLN

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning." Freiberg C., Perret X., Broughton W.J., Rosenthal A. Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]	"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.
[3]	"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

Cross-references

Sequence databases
EMBL GenBank DDBJ	Z68203 Genomic DNA. No translation available. U00090 Genomic DNA. Translation: AAB91876.1.
RefSeq	NP_444089.1. NC_000914.2.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	394.NGR_a01360.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAB91876; AAB91876; NGR_a01360.
GeneID	962160.
KEGG	rhi:NGR_a01360.
PATRIC	32300971. VBIRhiSp122450_0121.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG5328.
HOGENOM	HOG000251919.
OMA	MRIRAID.
ProtClustDB	PRK02853.
Family and domain databases
HAMAP	MF_00678. UPF0262.
InterPro	IPR008321. UCP032146. [Graphical view]
Pfam	PF06793. UPF0262. 1 hit. [Graphical view]
PIRSF	PIRSF032146. UCP032146. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Y4UD_RHISN

Accession

Primary (citable) accession number: P55670

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	May 1, 2013
This is version 49 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program