Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

UPF0262 protein y4uD

Gene

NGR_a01360

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-6458-MONOMER.
SFRE394:GBYN-6187-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0262 protein y4uDUniRule annotation
Gene namesi
Ordered Locus Names:NGR_a01360
ORF Names:y4uD
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054 Componenti: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 165165UPF0262 protein y4uDPRO_0000220333Add
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0262 family.UniRule annotation

Phylogenomic databases

eggNOGiCOG5328.
HOGENOMiHOG000251919.
OrthoDBiEOG6DC6M8.

Family and domain databases

HAMAPiMF_00678. UPF0262.
InterProiIPR008321. UCP032146.
[Graphical view]
PfamiPF06793. UPF0262. 1 hit.
[Graphical view]
PIRSFiPIRSF032146. UCP032146. 1 hit.

Sequencei

Sequence statusi: Complete.

P55670-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTGAEFRLCD VALDCSFKTR DQRVEREQAL AVLDLLEAST FVPVGHHGGP
60 70 80 90 100
YRLKISMAAG RLVFHIADDK GAHIVSHHLS LAPFRRLLND YSRTCEGYYE
110 120 130 140 150
AMCRSNLERL QAIDMGRRGI HDEAAELLRE RLSAKVDIDK DTARRLFTLI
160
YALLARNSGH QILLN
Length:165
Mass (Da):18,677
Last modified:November 1, 1997 - v1
Checksum:i904038CE491D1696
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. No translation available.
U00090 Genomic DNA. Translation: AAB91876.1.
RefSeqiNP_444089.1. NC_000914.2.
WP_010875174.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91876; AAB91876; NGR_a01360.
GeneIDi962160.
KEGGirhi:NGR_a01360.
PATRICi32300971. VBIRhiSp122450_0121.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. No translation available.
U00090 Genomic DNA. Translation: AAB91876.1.
RefSeqiNP_444089.1. NC_000914.2.
WP_010875174.1. NC_000914.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91876; AAB91876; NGR_a01360.
GeneIDi962160.
KEGGirhi:NGR_a01360.
PATRICi32300971. VBIRhiSp122450_0121.

Phylogenomic databases

eggNOGiCOG5328.
HOGENOMiHOG000251919.
OrthoDBiEOG6DC6M8.

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-6458-MONOMER.
SFRE394:GBYN-6187-MONOMER.

Family and domain databases

HAMAPiMF_00678. UPF0262.
InterProiIPR008321. UCP032146.
[Graphical view]
PfamiPF06793. UPF0262. 1 hit.
[Graphical view]
PIRSFiPIRSF032146. UCP032146. 1 hit.
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning."
    Freiberg C., Perret X., Broughton W.J., Rosenthal A.
    Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
  2. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4UD_RHISN
AccessioniPrimary (citable) accession number: P55670
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: June 24, 2015
This is version 60 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.