Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

P55670 (Y4UD_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 52. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (3) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
UPF0262 protein y4uD
Gene names
Ordered Locus Names:NGR_a01360
ORF Names:y4uD
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length165 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the UPF0262 family.

Ontologies

Keywords
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 165165UPF0262 protein y4uD HAMAP-Rule MF_00678
PRO_0000220333

Sequences

Sequence LengthMass (Da)Tools
P55670 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 904038CE491D1696

FASTA16518,677
        10         20         30         40         50         60 
MTGAEFRLCD VALDCSFKTR DQRVEREQAL AVLDLLEAST FVPVGHHGGP YRLKISMAAG 

        70         80         90        100        110        120 
RLVFHIADDK GAHIVSHHLS LAPFRRLLND YSRTCEGYYE AMCRSNLERL QAIDMGRRGI 

       130        140        150        160 
HDEAAELLRE RLSAKVDIDK DTARRLFTLI YALLARNSGH QILLN 

« Hide

References

« Hide 'large scale' references
[1]"Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning."
Freiberg C., Perret X., Broughton W.J., Rosenthal A.
Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
[2]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[3]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
Z68203 Genomic DNA. No translation available.
U00090 Genomic DNA. Translation: AAB91876.1.
RefSeqNP_444089.1. NC_000914.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a01360.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91876; AAB91876; NGR_a01360.
GeneID962160.
KEGGrhi:NGR_a01360.
PATRIC32300971. VBIRhiSp122450_0121.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG5328.
HOGENOMHOG000251919.
OMAMRIRAID.
OrthoDBEOG6DC6M8.
ProtClustDBPRK02853.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6187-MONOMER.

Family and domain databases

HAMAPMF_00678. UPF0262.
InterProIPR008321. UCP032146.
[Graphical view]
PfamPF06793. UPF0262. 1 hit.
[Graphical view]
PIRSFPIRSF032146. UCP032146. 1 hit.
ProtoNetSearch...

Entry information

Entry nameY4UD_RHISN
AccessionPrimary (citable) accession number: P55670
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: February 19, 2014
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Uncharacterized protein families (UPF)

List of uncharacterized protein family (UPF) entries

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names