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Protein

UPF0262 protein y4uD

Gene

NGR_a01360

Organism
Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0262 protein y4uDUniRule annotation
Gene namesi
Ordered Locus Names:NGR_a01360
ORF Names:y4uD
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiSinorhizobium fredii (strain NBRC 101917 / NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000001054 Componenti: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002203331 – 165UPF0262 protein y4uDAdd BLAST165

Structurei

3D structure databases

ProteinModelPortaliP55670.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0262 family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000251919.
OMAiMRIRAID.
OrthoDBiPOG091H0XTF.

Family and domain databases

HAMAPiMF_00678. UPF0262. 1 hit.
InterProiIPR008321. UCP032146.
[Graphical view]
PfamiPF06793. UPF0262. 1 hit.
[Graphical view]
PIRSFiPIRSF032146. UCP032146. 1 hit.

Sequencei

Sequence statusi: Complete.

P55670-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTGAEFRLCD VALDCSFKTR DQRVEREQAL AVLDLLEAST FVPVGHHGGP
60 70 80 90 100
YRLKISMAAG RLVFHIADDK GAHIVSHHLS LAPFRRLLND YSRTCEGYYE
110 120 130 140 150
AMCRSNLERL QAIDMGRRGI HDEAAELLRE RLSAKVDIDK DTARRLFTLI
160
YALLARNSGH QILLN
Length:165
Mass (Da):18,677
Last modified:November 1, 1997 - v1
Checksum:i904038CE491D1696
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. No translation available.
U00090 Genomic DNA. Translation: AAB91876.1.
RefSeqiNP_444089.1. NC_000914.2.
WP_010875174.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91876; AAB91876; NGR_a01360.
GeneIDi962160.
KEGGirhi:NGR_a01360.
PATRICi32300971. VBIRhiSp122450_0121.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z68203 Genomic DNA. No translation available.
U00090 Genomic DNA. Translation: AAB91876.1.
RefSeqiNP_444089.1. NC_000914.2.
WP_010875174.1. NC_000914.2.

3D structure databases

ProteinModelPortaliP55670.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91876; AAB91876; NGR_a01360.
GeneIDi962160.
KEGGirhi:NGR_a01360.
PATRICi32300971. VBIRhiSp122450_0121.

Phylogenomic databases

HOGENOMiHOG000251919.
OMAiMRIRAID.
OrthoDBiPOG091H0XTF.

Family and domain databases

HAMAPiMF_00678. UPF0262. 1 hit.
InterProiIPR008321. UCP032146.
[Graphical view]
PfamiPF06793. UPF0262. 1 hit.
[Graphical view]
PIRSFiPIRSF032146. UCP032146. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY4UD_SINFN
AccessioniPrimary (citable) accession number: P55670
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 2, 2016
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
  3. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.