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P55670

- Y4UD_RHISN

UniProt

P55670 - Y4UD_RHISN

Protein

UPF0262 protein y4uD

Gene

NGR_a01360

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 55 (01 Oct 2014)
      Sequence version 1 (01 Nov 1997)
      Previous versions | rss
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    Functioni

    Enzyme and pathway databases

    BioCyciRETL1328306-WGS:GSTH-6458-MONOMER.
    SFRE394:GBYN-6187-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    UPF0262 protein y4uDUniRule annotation
    Gene namesi
    Ordered Locus Names:NGR_a01360
    ORF Names:y4uD
    Encoded oniPlasmid sym pNGR234a0 Publication
    OrganismiRhizobium sp. (strain NGR234)
    Taxonomic identifieri394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001054: Plasmid sym pNGR234a

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 165165UPF0262 protein y4uDPRO_0000220333Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi394.NGR_a01360.

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the UPF0262 family.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG5328.
    HOGENOMiHOG000251919.
    OMAiMRIRAID.
    OrthoDBiEOG6DC6M8.

    Family and domain databases

    HAMAPiMF_00678. UPF0262.
    InterProiIPR008321. UCP032146.
    [Graphical view]
    PfamiPF06793. UPF0262. 1 hit.
    [Graphical view]
    PIRSFiPIRSF032146. UCP032146. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P55670-1 [UniParc]FASTAAdd to Basket

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    MTGAEFRLCD VALDCSFKTR DQRVEREQAL AVLDLLEAST FVPVGHHGGP    50
    YRLKISMAAG RLVFHIADDK GAHIVSHHLS LAPFRRLLND YSRTCEGYYE 100
    AMCRSNLERL QAIDMGRRGI HDEAAELLRE RLSAKVDIDK DTARRLFTLI 150
    YALLARNSGH QILLN 165
    Length:165
    Mass (Da):18,677
    Last modified:November 1, 1997 - v1
    Checksum:i904038CE491D1696
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z68203 Genomic DNA. No translation available.
    U00090 Genomic DNA. Translation: AAB91876.1.
    RefSeqiNP_444089.1. NC_000914.2.

    Genome annotation databases

    EnsemblBacteriaiAAB91876; AAB91876; NGR_a01360.
    GeneIDi962160.
    KEGGirhi:NGR_a01360.
    PATRICi32300971. VBIRhiSp122450_0121.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    Z68203 Genomic DNA. No translation available.
    U00090 Genomic DNA. Translation: AAB91876.1 .
    RefSeqi NP_444089.1. NC_000914.2.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 394.NGR_a01360.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB91876 ; AAB91876 ; NGR_a01360 .
    GeneIDi 962160.
    KEGGi rhi:NGR_a01360.
    PATRICi 32300971. VBIRhiSp122450_0121.

    Phylogenomic databases

    eggNOGi COG5328.
    HOGENOMi HOG000251919.
    OMAi MRIRAID.
    OrthoDBi EOG6DC6M8.

    Enzyme and pathway databases

    BioCyci RETL1328306-WGS:GSTH-6458-MONOMER.
    SFRE394:GBYN-6187-MONOMER.

    Family and domain databases

    HAMAPi MF_00678. UPF0262.
    InterProi IPR008321. UCP032146.
    [Graphical view ]
    Pfami PF06793. UPF0262. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF032146. UCP032146. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Sequencing the 500-kb GC-rich symbiotic replicon of Rhizobium sp. NGR234 using dye terminators and a thermostable 'sequenase': a beginning."
      Freiberg C., Perret X., Broughton W.J., Rosenthal A.
      Genome Res. 6:590-600(1996) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA].
    2. "Molecular basis of symbiosis between Rhizobium and legumes."
      Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
      Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.

    Entry informationi

    Entry nameiY4UD_RHISN
    AccessioniPrimary (citable) accession number: P55670
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 55 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Plasmid, Reference proteome

    Documents

    1. Rhizobium plasmid pNGR234a
      Rhizobium plasmid pNGR234a: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families
    3. Uncharacterized protein families (UPF)
      List of uncharacterized protein family (UPF) entries

    External Data

    Dasty 3