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Protein

Uncharacterized HTH-type transcriptional regulator y4tD

Gene

NGR_a01550

Organism
Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi37 – 56H-T-H motifPROSITE-ProRule annotationAdd BLAST20

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6190-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator y4tD
Gene namesi
Ordered Locus Names:NGR_a01550
ORF Names:y4tD
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiSinorhizobium fredii (strain NBRC 101917 / NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000001054 Componenti: Plasmid sym pNGR234a

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001117511 – 169Uncharacterized HTH-type transcriptional regulator y4tDAdd BLAST169

Structurei

3D structure databases

ProteinModelPortaliP55658
SMRiP55658
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini18 – 79HTH asnC-typePROSITE-ProRule annotationAdd BLAST62

Phylogenomic databases

HOGENOMiHOG000115327
OMAiEVLECYV
OrthoDBiPOG091H02L8

Family and domain databases

CDDicd00090 HTH_ARSR, 1 hit
Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR011991 ArsR-like_HTH
IPR000485 AsnC-type_HTH_dom
IPR011008 Dimeric_a/b-barrel
IPR019888 Tscrpt_reg_AsnC-typ
IPR019887 Tscrpt_reg_AsnC/Lrp_C
IPR019885 Tscrpt_reg_HTH_AsnC-type_CS
IPR036388 WH-like_DNA-bd_sf
IPR036390 WH_DNA-bd_sf
PfamiView protein in Pfam
PF01037 AsnC_trans_reg, 1 hit
PRINTSiPR00033 HTHASNC
SMARTiView protein in SMART
SM00344 HTH_ASNC, 1 hit
SUPFAMiSSF46785 SSF46785, 1 hit
SSF54909 SSF54909, 1 hit
PROSITEiView protein in PROSITE
PS00519 HTH_ASNC_1, 1 hit
PS50956 HTH_ASNC_2, 1 hit

Sequencei

Sequence statusi: Complete.

P55658-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQDVCNSQEI LQDYAMELDR ADVALLNAVQ KNNRLTSEEL ADKVGLSPTA
60 70 80 90 100
CQRRLKRLRS LGVIEADVSI VSPKAVGRPV TMIVMVSLER ERADIVDRFK
110 120 130 140 150
SSIRNTREVM IGYYVTGDAD FILIVTAKDM EEYEEFTRRF FYENHDIKGF
160
KTMVVMDRVK ATFAVPIEI
Length:169
Mass (Da):19,330
Last modified:November 1, 1997 - v1
Checksum:iDDBE0D9A11EE57F6
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA Translation: AAB91857.1
RefSeqiNP_444070.1, NC_000914.2
WP_010875193.1, NC_000914.2

Genome annotation databases

EnsemblBacteriaiAAB91857; AAB91857; NGR_a01550
GeneIDi962444
KEGGirhi:NGR_a01550
PATRICifig|394.7.peg.142

Similar proteinsi

Entry informationi

Entry nameiY4TD_SINFN
AccessioniPrimary (citable) accession number: P55658
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: March 28, 2018
This is version 100 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

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