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P55658 (Y4TD_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 77. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized HTH-type transcriptional regulator y4tD
Gene names
Ordered Locus Names:NGR_a01550
ORF Names:y4tD
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length169 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 HTH asnC-type DNA-binding domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 169169Uncharacterized HTH-type transcriptional regulator y4tD
PRO_0000111751

Regions

Domain18 – 7962HTH asnC-type
DNA binding37 – 5620H-T-H motif Potential

Sequences

Sequence LengthMass (Da)Tools
P55658 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: DDBE0D9A11EE57F6

FASTA16919,330
        10         20         30         40         50         60 
MQDVCNSQEI LQDYAMELDR ADVALLNAVQ KNNRLTSEEL ADKVGLSPTA CQRRLKRLRS 

        70         80         90        100        110        120 
LGVIEADVSI VSPKAVGRPV TMIVMVSLER ERADIVDRFK SSIRNTREVM IGYYVTGDAD 

       130        140        150        160 
FILIVTAKDM EEYEEFTRRF FYENHDIKGF KTMVVMDRVK ATFAVPIEI 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB91857.1.
RefSeqNP_444070.1. NC_000914.2.

3D structure databases

ProteinModelPortalP55658.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a01550.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91857; AAB91857; NGR_a01550.
GeneID962444.
KEGGrhi:NGR_a01550.
PATRIC32301013. VBIRhiSp122450_0142.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1522.
HOGENOMHOG000115327.
OMAYENHDIK.
OrthoDBEOG6F29D2.
ProtClustDBCLSK513373.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6206-MONOMER.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
3.30.70.920. 1 hit.
InterProIPR000485. AsnC-type_HTH_dom.
IPR011008. Dimeric_a/b-barrel.
IPR019888. Tscrpt_reg_AsnC-typ.
IPR019887. Tscrpt_reg_AsnC-typ_C.
IPR019885. Tscrpt_reg_HTH_AsnC-type_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF01037. AsnC_trans_reg. 1 hit.
PF13412. HTH_24. 1 hit.
[Graphical view]
PRINTSPR00033. HTHASNC.
SMARTSM00344. HTH_ASNC. 1 hit.
[Graphical view]
SUPFAMSSF54909. SSF54909. 1 hit.
PROSITEPS00519. HTH_ASNC_1. 1 hit.
PS50956. HTH_ASNC_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY4TD_RHISN
AccessionPrimary (citable) accession number: P55658
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: February 19, 2014
This is version 77 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names