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P55658

- Y4TD_RHISN

UniProt

P55658 - Y4TD_RHISN

Protein

Uncharacterized HTH-type transcriptional regulator y4tD

Gene

NGR_a01550

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 81 (01 Oct 2014)
      Sequence version 1 (01 Nov 1997)
      Previous versions | rss
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    Functioni

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    DNA bindingi37 – 5620H-T-H motifPROSITE-ProRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. sequence-specific DNA binding Source: InterPro
    2. sequence-specific DNA binding transcription factor activity Source: InterPro

    GO - Biological processi

    1. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-binding

    Enzyme and pathway databases

    BioCyciRETL1328306-WGS:GSTH-6768-MONOMER.
    SFRE394:GBYN-6206-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Uncharacterized HTH-type transcriptional regulator y4tD
    Gene namesi
    Ordered Locus Names:NGR_a01550
    ORF Names:y4tD
    Encoded oniPlasmid sym pNGR234a0 Publication
    OrganismiRhizobium sp. (strain NGR234)
    Taxonomic identifieri394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001054: Plasmid sym pNGR234a

    Subcellular locationi

    GO - Cellular componenti

    1. intracellular Source: InterPro

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 169169Uncharacterized HTH-type transcriptional regulator y4tDPRO_0000111751Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi394.NGR_a01550.

    Structurei

    3D structure databases

    ProteinModelPortaliP55658.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini18 – 7962HTH asnC-typePROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 HTH asnC-type DNA-binding domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiCOG1522.
    HOGENOMiHOG000115327.
    OMAiRRFFYEN.
    OrthoDBiEOG6F29D2.

    Family and domain databases

    Gene3Di1.10.10.10. 1 hit.
    3.30.70.920. 1 hit.
    InterProiIPR000485. AsnC-type_HTH_dom.
    IPR011008. Dimeric_a/b-barrel.
    IPR019888. Tscrpt_reg_AsnC-typ.
    IPR019887. Tscrpt_reg_AsnC-typ_C.
    IPR019885. Tscrpt_reg_HTH_AsnC-type_CS.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view]
    PfamiPF01037. AsnC_trans_reg. 1 hit.
    PF13412. HTH_24. 1 hit.
    [Graphical view]
    PRINTSiPR00033. HTHASNC.
    SMARTiSM00344. HTH_ASNC. 1 hit.
    [Graphical view]
    SUPFAMiSSF54909. SSF54909. 1 hit.
    PROSITEiPS00519. HTH_ASNC_1. 1 hit.
    PS50956. HTH_ASNC_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P55658-1 [UniParc]FASTAAdd to Basket

    « Hide

    MQDVCNSQEI LQDYAMELDR ADVALLNAVQ KNNRLTSEEL ADKVGLSPTA    50
    CQRRLKRLRS LGVIEADVSI VSPKAVGRPV TMIVMVSLER ERADIVDRFK 100
    SSIRNTREVM IGYYVTGDAD FILIVTAKDM EEYEEFTRRF FYENHDIKGF 150
    KTMVVMDRVK ATFAVPIEI 169
    Length:169
    Mass (Da):19,330
    Last modified:November 1, 1997 - v1
    Checksum:iDDBE0D9A11EE57F6
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91857.1.
    RefSeqiNP_444070.1. NC_000914.2.
    WP_010875193.1. NC_000914.2.

    Genome annotation databases

    EnsemblBacteriaiAAB91857; AAB91857; NGR_a01550.
    GeneIDi962444.
    KEGGirhi:NGR_a01550.
    PATRICi32301013. VBIRhiSp122450_0142.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91857.1 .
    RefSeqi NP_444070.1. NC_000914.2.
    WP_010875193.1. NC_000914.2.

    3D structure databases

    ProteinModelPortali P55658.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 394.NGR_a01550.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB91857 ; AAB91857 ; NGR_a01550 .
    GeneIDi 962444.
    KEGGi rhi:NGR_a01550.
    PATRICi 32301013. VBIRhiSp122450_0142.

    Phylogenomic databases

    eggNOGi COG1522.
    HOGENOMi HOG000115327.
    OMAi RRFFYEN.
    OrthoDBi EOG6F29D2.

    Enzyme and pathway databases

    BioCyci RETL1328306-WGS:GSTH-6768-MONOMER.
    SFRE394:GBYN-6206-MONOMER.

    Family and domain databases

    Gene3Di 1.10.10.10. 1 hit.
    3.30.70.920. 1 hit.
    InterProi IPR000485. AsnC-type_HTH_dom.
    IPR011008. Dimeric_a/b-barrel.
    IPR019888. Tscrpt_reg_AsnC-typ.
    IPR019887. Tscrpt_reg_AsnC-typ_C.
    IPR019885. Tscrpt_reg_HTH_AsnC-type_CS.
    IPR011991. WHTH_DNA-bd_dom.
    [Graphical view ]
    Pfami PF01037. AsnC_trans_reg. 1 hit.
    PF13412. HTH_24. 1 hit.
    [Graphical view ]
    PRINTSi PR00033. HTHASNC.
    SMARTi SM00344. HTH_ASNC. 1 hit.
    [Graphical view ]
    SUPFAMi SSF54909. SSF54909. 1 hit.
    PROSITEi PS00519. HTH_ASNC_1. 1 hit.
    PS50956. HTH_ASNC_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Molecular basis of symbiosis between Rhizobium and legumes."
      Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
      Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.

    Entry informationi

    Entry nameiY4TD_RHISN
    AccessioniPrimary (citable) accession number: P55658
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 81 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Plasmid, Reference proteome

    Documents

    1. Rhizobium plasmid pNGR234a
      Rhizobium plasmid pNGR234a: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3