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P55658

- Y4TD_RHISN

UniProt

P55658 - Y4TD_RHISN

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Protein

Uncharacterized HTH-type transcriptional regulator y4tD

Gene

NGR_a01550

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi37 – 5620H-T-H motifPROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. sequence-specific DNA binding Source: InterPro
  2. sequence-specific DNA binding transcription factor activity Source: InterPro

GO - Biological processi

  1. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-6768-MONOMER.
SFRE394:GBYN-6206-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator y4tD
Gene namesi
Ordered Locus Names:NGR_a01550
ORF Names:y4tD
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

Subcellular locationi

GO - Cellular componenti

  1. intracellular Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 169169Uncharacterized HTH-type transcriptional regulator y4tDPRO_0000111751Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a01550.

Structurei

3D structure databases

ProteinModelPortaliP55658.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini18 – 7962HTH asnC-typePROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH asnC-type DNA-binding domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiCOG1522.
HOGENOMiHOG000115327.
OMAiRRFFYEN.
OrthoDBiEOG6F29D2.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
3.30.70.920. 1 hit.
InterProiIPR000485. AsnC-type_HTH_dom.
IPR011008. Dimeric_a/b-barrel.
IPR019888. Tscrpt_reg_AsnC-typ.
IPR019887. Tscrpt_reg_AsnC-typ_C.
IPR019885. Tscrpt_reg_HTH_AsnC-type_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF01037. AsnC_trans_reg. 1 hit.
PF13412. HTH_24. 1 hit.
[Graphical view]
PRINTSiPR00033. HTHASNC.
SMARTiSM00344. HTH_ASNC. 1 hit.
[Graphical view]
SUPFAMiSSF54909. SSF54909. 1 hit.
PROSITEiPS00519. HTH_ASNC_1. 1 hit.
PS50956. HTH_ASNC_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55658-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MQDVCNSQEI LQDYAMELDR ADVALLNAVQ KNNRLTSEEL ADKVGLSPTA
60 70 80 90 100
CQRRLKRLRS LGVIEADVSI VSPKAVGRPV TMIVMVSLER ERADIVDRFK
110 120 130 140 150
SSIRNTREVM IGYYVTGDAD FILIVTAKDM EEYEEFTRRF FYENHDIKGF
160
KTMVVMDRVK ATFAVPIEI
Length:169
Mass (Da):19,330
Last modified:November 1, 1997 - v1
Checksum:iDDBE0D9A11EE57F6
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB91857.1.
RefSeqiNP_444070.1. NC_000914.2.
WP_010875193.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91857; AAB91857; NGR_a01550.
GeneIDi962444.
KEGGirhi:NGR_a01550.
PATRICi32301013. VBIRhiSp122450_0142.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB91857.1 .
RefSeqi NP_444070.1. NC_000914.2.
WP_010875193.1. NC_000914.2.

3D structure databases

ProteinModelPortali P55658.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_a01550.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB91857 ; AAB91857 ; NGR_a01550 .
GeneIDi 962444.
KEGGi rhi:NGR_a01550.
PATRICi 32301013. VBIRhiSp122450_0142.

Phylogenomic databases

eggNOGi COG1522.
HOGENOMi HOG000115327.
OMAi RRFFYEN.
OrthoDBi EOG6F29D2.

Enzyme and pathway databases

BioCyci RETL1328306-WGS:GSTH-6768-MONOMER.
SFRE394:GBYN-6206-MONOMER.

Family and domain databases

Gene3Di 1.10.10.10. 1 hit.
3.30.70.920. 1 hit.
InterProi IPR000485. AsnC-type_HTH_dom.
IPR011008. Dimeric_a/b-barrel.
IPR019888. Tscrpt_reg_AsnC-typ.
IPR019887. Tscrpt_reg_AsnC-typ_C.
IPR019885. Tscrpt_reg_HTH_AsnC-type_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view ]
Pfami PF01037. AsnC_trans_reg. 1 hit.
PF13412. HTH_24. 1 hit.
[Graphical view ]
PRINTSi PR00033. HTHASNC.
SMARTi SM00344. HTH_ASNC. 1 hit.
[Graphical view ]
SUPFAMi SSF54909. SSF54909. 1 hit.
PROSITEi PS00519. HTH_ASNC_1. 1 hit.
PS50956. HTH_ASNC_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4TD_RHISN
AccessioniPrimary (citable) accession number: P55658
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: October 1, 2014
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3