P55646 (Y4RM_RHISN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Uncharacterized protein y4rM

Gene names

Ordered Locus Names:	NGR_a01740
ORF Names:	y4rM

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium › Sinorhizobium fredii group › Rhizobium fredii

Protein attributes

Sequence length	350 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 integrase catalytic domain.

Ontologies

Keywords
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
Biological_process	DNA integration Inferred from electronic annotation. Source: InterPro
Molecular_function	nucleic acid binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 350	350	Uncharacterized protein y4rM		PRO_0000200945
Regions
	Domain	164 – 327	164	Integrase catalytic

Sequences

	Sequence		Length	Mass (Da)
	P55646 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 6CBE6FACADD70DFC	FASTA	350	39,381
	10 20 30 40 50 60 MARRISMATR TELVEAIIER YRSSCRADKQ RILDEFVAVT GYHRKHAIRV LRPSESEPPC 70 80 90 100 110 120 ARQYAVRYGP EVREALVALW EASDRLCSKR LKPLIPILLP ALERHGRLDL STELRDKLLT 130 140 150 160 170 180 VSAATMDRLL SEIRVVARGG QRRRAGMSSA VRRSVPVRTF GDWNDPLPGY VEVDFVAHSG 190 200 210 220 230 240 TSSSGSFVQT MVLTDIATGW TECVPVRTRE SGLVIAALNQ ARSLFPFPLQ GVDFDNDSAF 250 260 270 280 290 300 MNERVVCWCR SQGLEVTRSR AYRKNDQAWV EQKNGAIVRR LVGYGRLVGA EATAALGRLY 310 320 330 340 350 DVVRLYGNLF QPSFKLREKT RIGARVVKRY HPPVPPIARG GCPFRCGRGR

References

[1]

"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

[2]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U00090 Genomic DNA. Translation: AAB91838.1.
RefSeq	NP_444051.1. NC_000914.2.
3D structure databases
ProteinModelPortal	P55646.
ModBase	Search...
Protein-protein interaction databases
STRING	394.NGR_a01740.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAB91838; AAB91838; NGR_a01740.
GeneID	962423.
KEGG	rhi:NGR_a01740.
PATRIC	32301067. VBIRhiSp122450_0169.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	NOG06353.
HOGENOM	HOG000220567.
OMA	DNDSAFM.
Enzyme and pathway databases
BioCyc	SFRE394:GBYN-6225-MONOMER.
Family and domain databases
InterPro	IPR001584. Integrase_cat-core. IPR012337. RNaseH-like_dom. [Graphical view]
Pfam	PF00665. rve. 1 hit. [Graphical view]
SUPFAM	SSF53098. RNaseH_fold. 1 hit.
PROSITE	PS50994. INTEGRASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y4RM_RHISN

Accession

Primary (citable) accession number: P55646

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	May 29, 2013
This is version 52 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program