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Protein

Uncharacterized protein y4rM

Gene

NGR_a01740

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6225-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein y4rM
Gene namesi
Ordered Locus Names:NGR_a01740
ORF Names:y4rM
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054 Componenti: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 350350Uncharacterized protein y4rMPRO_0000200945Add
BLAST

Structurei

3D structure databases

ProteinModelPortaliP55646.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini164 – 327164Integrase catalyticPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 integrase catalytic domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiNOG06353.
HOGENOMiHOG000220567.
OMAiWTECAPL.
OrthoDBiEOG6RNQ9H.

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
InterProiIPR001584. Integrase_cat-core.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamiPF00665. rve. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
PROSITEiPS50994. INTEGRASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55646-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARRISMATR TELVEAIIER YRSSCRADKQ RILDEFVAVT GYHRKHAIRV
60 70 80 90 100
LRPSESEPPC ARQYAVRYGP EVREALVALW EASDRLCSKR LKPLIPILLP
110 120 130 140 150
ALERHGRLDL STELRDKLLT VSAATMDRLL SEIRVVARGG QRRRAGMSSA
160 170 180 190 200
VRRSVPVRTF GDWNDPLPGY VEVDFVAHSG TSSSGSFVQT MVLTDIATGW
210 220 230 240 250
TECVPVRTRE SGLVIAALNQ ARSLFPFPLQ GVDFDNDSAF MNERVVCWCR
260 270 280 290 300
SQGLEVTRSR AYRKNDQAWV EQKNGAIVRR LVGYGRLVGA EATAALGRLY
310 320 330 340 350
DVVRLYGNLF QPSFKLREKT RIGARVVKRY HPPVPPIARG GCPFRCGRGR
Length:350
Mass (Da):39,381
Last modified:November 1, 1997 - v1
Checksum:i6CBE6FACADD70DFC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91838.1.
RefSeqiNP_444051.1. NC_000914.2.
WP_010875210.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91838; AAB91838; NGR_a01740.
GeneIDi962423.
KEGGirhi:NGR_a01740.
PATRICi32301067. VBIRhiSp122450_0169.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91838.1.
RefSeqiNP_444051.1. NC_000914.2.
WP_010875210.1. NC_000914.2.

3D structure databases

ProteinModelPortaliP55646.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91838; AAB91838; NGR_a01740.
GeneIDi962423.
KEGGirhi:NGR_a01740.
PATRICi32301067. VBIRhiSp122450_0169.

Phylogenomic databases

eggNOGiNOG06353.
HOGENOMiHOG000220567.
OMAiWTECAPL.
OrthoDBiEOG6RNQ9H.

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6225-MONOMER.

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
InterProiIPR001584. Integrase_cat-core.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamiPF00665. rve. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
PROSITEiPS50994. INTEGRASE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4RM_RHISN
AccessioniPrimary (citable) accession number: P55646
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: June 24, 2015
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.