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P55646

- Y4RM_RHISN

UniProt

P55646 - Y4RM_RHISN

Protein

Uncharacterized protein y4rM

Gene

NGR_a01740

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 1 out of 5- Protein inferred from homologyi
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    • History
      Entry version 57 (01 Oct 2014)
      Sequence version 1 (01 Nov 1997)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. nucleic acid binding Source: InterPro

    GO - Biological processi

    1. DNA integration Source: InterPro

    Enzyme and pathway databases

    BioCyciSFRE394:GBYN-6225-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Uncharacterized protein y4rM
    Gene namesi
    Ordered Locus Names:NGR_a01740
    ORF Names:y4rM
    Encoded oniPlasmid sym pNGR234a0 Publication
    OrganismiRhizobium sp. (strain NGR234)
    Taxonomic identifieri394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001054: Plasmid sym pNGR234a

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 350350Uncharacterized protein y4rMPRO_0000200945Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi394.NGR_a01740.

    Structurei

    3D structure databases

    ProteinModelPortaliP55646.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini164 – 327164Integrase catalyticPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 integrase catalytic domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiNOG06353.
    HOGENOMiHOG000220567.
    OMAiWTECAPL.
    OrthoDBiEOG6RNQ9H.

    Family and domain databases

    Gene3Di3.30.420.10. 1 hit.
    InterProiIPR001584. Integrase_cat-core.
    IPR012337. RNaseH-like_dom.
    [Graphical view]
    PfamiPF00665. rve. 1 hit.
    [Graphical view]
    SUPFAMiSSF53098. SSF53098. 1 hit.
    PROSITEiPS50994. INTEGRASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P55646-1 [UniParc]FASTAAdd to Basket

    « Hide

    MARRISMATR TELVEAIIER YRSSCRADKQ RILDEFVAVT GYHRKHAIRV    50
    LRPSESEPPC ARQYAVRYGP EVREALVALW EASDRLCSKR LKPLIPILLP 100
    ALERHGRLDL STELRDKLLT VSAATMDRLL SEIRVVARGG QRRRAGMSSA 150
    VRRSVPVRTF GDWNDPLPGY VEVDFVAHSG TSSSGSFVQT MVLTDIATGW 200
    TECVPVRTRE SGLVIAALNQ ARSLFPFPLQ GVDFDNDSAF MNERVVCWCR 250
    SQGLEVTRSR AYRKNDQAWV EQKNGAIVRR LVGYGRLVGA EATAALGRLY 300
    DVVRLYGNLF QPSFKLREKT RIGARVVKRY HPPVPPIARG GCPFRCGRGR 350
    Length:350
    Mass (Da):39,381
    Last modified:November 1, 1997 - v1
    Checksum:i6CBE6FACADD70DFC
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91838.1.
    RefSeqiNP_444051.1. NC_000914.2.
    WP_010875210.1. NC_000914.2.

    Genome annotation databases

    EnsemblBacteriaiAAB91838; AAB91838; NGR_a01740.
    GeneIDi962423.
    KEGGirhi:NGR_a01740.
    PATRICi32301067. VBIRhiSp122450_0169.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91838.1 .
    RefSeqi NP_444051.1. NC_000914.2.
    WP_010875210.1. NC_000914.2.

    3D structure databases

    ProteinModelPortali P55646.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 394.NGR_a01740.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB91838 ; AAB91838 ; NGR_a01740 .
    GeneIDi 962423.
    KEGGi rhi:NGR_a01740.
    PATRICi 32301067. VBIRhiSp122450_0169.

    Phylogenomic databases

    eggNOGi NOG06353.
    HOGENOMi HOG000220567.
    OMAi WTECAPL.
    OrthoDBi EOG6RNQ9H.

    Enzyme and pathway databases

    BioCyci SFRE394:GBYN-6225-MONOMER.

    Family and domain databases

    Gene3Di 3.30.420.10. 1 hit.
    InterProi IPR001584. Integrase_cat-core.
    IPR012337. RNaseH-like_dom.
    [Graphical view ]
    Pfami PF00665. rve. 1 hit.
    [Graphical view ]
    SUPFAMi SSF53098. SSF53098. 1 hit.
    PROSITEi PS50994. INTEGRASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Molecular basis of symbiosis between Rhizobium and legumes."
      Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
      Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.

    Entry informationi

    Entry nameiY4RM_RHISN
    AccessioniPrimary (citable) accession number: P55646
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 57 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Plasmid, Reference proteome

    Documents

    1. Rhizobium plasmid pNGR234a
      Rhizobium plasmid pNGR234a: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3