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P55646

- Y4RM_RHISN

UniProt

P55646 - Y4RM_RHISN

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Protein
Uncharacterized protein y4rM
Gene
NGR_a01740, y4rM
Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. nucleic acid binding Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA integration Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6225-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein y4rM
Gene namesi
Ordered Locus Names:NGR_a01740
ORF Names:y4rM
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 350350Uncharacterized protein y4rM
PRO_0000200945Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a01740.

Structurei

3D structure databases

ProteinModelPortaliP55646.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini164 – 327164Integrase catalytic
Add
BLAST

Sequence similaritiesi

Phylogenomic databases

eggNOGiNOG06353.
HOGENOMiHOG000220567.
OMAiWTECAPL.
OrthoDBiEOG6RNQ9H.

Family and domain databases

Gene3Di3.30.420.10. 1 hit.
InterProiIPR001584. Integrase_cat-core.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamiPF00665. rve. 1 hit.
[Graphical view]
SUPFAMiSSF53098. SSF53098. 1 hit.
PROSITEiPS50994. INTEGRASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55646-1 [UniParc]FASTAAdd to Basket

« Hide

MARRISMATR TELVEAIIER YRSSCRADKQ RILDEFVAVT GYHRKHAIRV    50
LRPSESEPPC ARQYAVRYGP EVREALVALW EASDRLCSKR LKPLIPILLP 100
ALERHGRLDL STELRDKLLT VSAATMDRLL SEIRVVARGG QRRRAGMSSA 150
VRRSVPVRTF GDWNDPLPGY VEVDFVAHSG TSSSGSFVQT MVLTDIATGW 200
TECVPVRTRE SGLVIAALNQ ARSLFPFPLQ GVDFDNDSAF MNERVVCWCR 250
SQGLEVTRSR AYRKNDQAWV EQKNGAIVRR LVGYGRLVGA EATAALGRLY 300
DVVRLYGNLF QPSFKLREKT RIGARVVKRY HPPVPPIARG GCPFRCGRGR 350
Length:350
Mass (Da):39,381
Last modified:November 1, 1997 - v1
Checksum:i6CBE6FACADD70DFC
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB91838.1.
RefSeqiNP_444051.1. NC_000914.2.
WP_010875210.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91838; AAB91838; NGR_a01740.
GeneIDi962423.
KEGGirhi:NGR_a01740.
PATRICi32301067. VBIRhiSp122450_0169.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB91838.1 .
RefSeqi NP_444051.1. NC_000914.2.
WP_010875210.1. NC_000914.2.

3D structure databases

ProteinModelPortali P55646.
ModBasei Search...

Protein-protein interaction databases

STRINGi 394.NGR_a01740.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB91838 ; AAB91838 ; NGR_a01740 .
GeneIDi 962423.
KEGGi rhi:NGR_a01740.
PATRICi 32301067. VBIRhiSp122450_0169.

Phylogenomic databases

eggNOGi NOG06353.
HOGENOMi HOG000220567.
OMAi WTECAPL.
OrthoDBi EOG6RNQ9H.

Enzyme and pathway databases

BioCyci SFRE394:GBYN-6225-MONOMER.

Family and domain databases

Gene3Di 3.30.420.10. 1 hit.
InterProi IPR001584. Integrase_cat-core.
IPR012337. RNaseH-like_dom.
[Graphical view ]
Pfami PF00665. rve. 1 hit.
[Graphical view ]
SUPFAMi SSF53098. SSF53098. 1 hit.
PROSITEi PS50994. INTEGRASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4RM_RHISN
AccessioniPrimary (citable) accession number: P55646
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: September 3, 2014
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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