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P55646 (Y4RM_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized protein y4rM
Gene names
Ordered Locus Names:NGR_a01740
ORF Names:y4rM
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length350 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 integrase catalytic domain.

Ontologies

Keywords
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Biological_processDNA integration

Inferred from electronic annotation. Source: InterPro

   Molecular_functionnucleic acid binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 350350Uncharacterized protein y4rM
PRO_0000200945

Regions

Domain164 – 327164Integrase catalytic

Sequences

Sequence LengthMass (Da)Tools
P55646 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 6CBE6FACADD70DFC

FASTA35039,381
        10         20         30         40         50         60 
MARRISMATR TELVEAIIER YRSSCRADKQ RILDEFVAVT GYHRKHAIRV LRPSESEPPC 

        70         80         90        100        110        120 
ARQYAVRYGP EVREALVALW EASDRLCSKR LKPLIPILLP ALERHGRLDL STELRDKLLT 

       130        140        150        160        170        180 
VSAATMDRLL SEIRVVARGG QRRRAGMSSA VRRSVPVRTF GDWNDPLPGY VEVDFVAHSG 

       190        200        210        220        230        240 
TSSSGSFVQT MVLTDIATGW TECVPVRTRE SGLVIAALNQ ARSLFPFPLQ GVDFDNDSAF 

       250        260        270        280        290        300 
MNERVVCWCR SQGLEVTRSR AYRKNDQAWV EQKNGAIVRR LVGYGRLVGA EATAALGRLY 

       310        320        330        340        350 
DVVRLYGNLF QPSFKLREKT RIGARVVKRY HPPVPPIARG GCPFRCGRGR 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB91838.1.
RefSeqNP_444051.1. NC_000914.2.

3D structure databases

ProteinModelPortalP55646.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a01740.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91838; AAB91838; NGR_a01740.
GeneID962423.
KEGGrhi:NGR_a01740.
PATRIC32301067. VBIRhiSp122450_0169.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG06353.
HOGENOMHOG000220567.
OMAWTECAPL.
OrthoDBEOG6RNQ9H.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6225-MONOMER.

Family and domain databases

Gene3D3.30.420.10. 1 hit.
InterProIPR001584. Integrase_cat-core.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamPF00665. rve. 1 hit.
[Graphical view]
SUPFAMSSF53098. SSF53098. 1 hit.
PROSITEPS50994. INTEGRASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY4RM_RHISN
AccessionPrimary (citable) accession number: P55646
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: April 16, 2014
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names