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P55634

- Y4RA_RHISN

UniProt

P55634 - Y4RA_RHISN

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Protein

Putative integrase/recombinase y4rA

Gene

NGR_a01860

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei389 – 3891O-(3'-phospho-DNA)-tyrosine intermediateBy similarity

GO - Molecular functioni

  1. DNA binding Source: InterPro

GO - Biological processi

  1. DNA integration Source: UniProtKB-KW
  2. DNA recombination Source: UniProtKB-KW
  3. establishment of integrated proviral latency Source: UniProtKB-KW
  4. viral entry into host cell Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

DNA integration, DNA recombination, Viral genome integration, Virus entry into host cell

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6237-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative integrase/recombinase y4rA
Gene namesi
Ordered Locus Names:NGR_a01860
ORF Names:y4rA
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 409409Putative integrase/recombinase y4rAPRO_0000197577Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a01860.

Structurei

3D structure databases

ProteinModelPortaliP55634.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the 'phage' integrase family.Curated

Phylogenomic databases

eggNOGiCOG0582.
HOGENOMiHOG000224853.
OMAiTHAIAGM.
OrthoDBiEOG6N946B.

Family and domain databases

Gene3Di1.10.150.130. 1 hit.
1.10.443.10. 1 hit.
InterProiIPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
IPR023109. Integrase_recombinase_N.
IPR004107. Integrase_SAM-like_N.
[Graphical view]
PfamiPF02899. Phage_int_SAM_1. 1 hit.
PF00589. Phage_integrase. 1 hit.
[Graphical view]
SUPFAMiSSF56349. SSF56349. 1 hit.

Sequencei

Sequence statusi: Complete.

P55634-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MKYFVNADFA LSRPPEGPVA IYIIPFAEWL VDRGYGLVST RNQVLMAAGF
60 70 80 90 100
SSWLRQKGIG LSDINGEHAG RYLLDRVQRP KLGDDAALRH LLAFLRSQNA
110 120 130 140 150
IAEEIEVDHN PSAVEQHVQA YERHLRDARA LSRQTIINYR PVVRDFLSFR
160 170 180 190 200
FGDGEISLAQ LRAADVTDFV QKKVSRLNMR RAKIVTTALR SFLSYARYRG
210 220 230 240 250
DITSDLAAAV PIVANWSLSS IPRAIGRDDV SRLLSSIDRD TPIGCRDYAM
260 270 280 290 300
ILALARLGLR SSEVVTLELD DIDWVAGRIR VRGKHGRNEL PLPADVGEAI
310 320 330 340 350
ADYLWRARPR NASRRVFLRD KAPIRGFVGP SGLGSIVRRS LKRTGIDSPT
360 370 380 390 400
KGTHQFRHGL ASEMLRGGAS LGEIGEVLGH RHVQTTAIYA KVDLDALRTL

ALPWPGEAQ
Length:409
Mass (Da):45,528
Last modified:November 1, 1997 - v1
Checksum:iEC531CCC43C84B36
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB92467.1.
RefSeqiNP_444039.1. NC_000914.2.
WP_010875220.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB92467; AAB92467; NGR_a01860.
GeneIDi962535.
KEGGirhi:NGR_a01860.
PATRICi32301097. VBIRhiSp122450_0184.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB92467.1 .
RefSeqi NP_444039.1. NC_000914.2.
WP_010875220.1. NC_000914.2.

3D structure databases

ProteinModelPortali P55634.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_a01860.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB92467 ; AAB92467 ; NGR_a01860 .
GeneIDi 962535.
KEGGi rhi:NGR_a01860.
PATRICi 32301097. VBIRhiSp122450_0184.

Phylogenomic databases

eggNOGi COG0582.
HOGENOMi HOG000224853.
OMAi THAIAGM.
OrthoDBi EOG6N946B.

Enzyme and pathway databases

BioCyci SFRE394:GBYN-6237-MONOMER.

Family and domain databases

Gene3Di 1.10.150.130. 1 hit.
1.10.443.10. 1 hit.
InterProi IPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
IPR023109. Integrase_recombinase_N.
IPR004107. Integrase_SAM-like_N.
[Graphical view ]
Pfami PF02899. Phage_int_SAM_1. 1 hit.
PF00589. Phage_integrase. 1 hit.
[Graphical view ]
SUPFAMi SSF56349. SSF56349. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4RA_RHISN
AccessioniPrimary (citable) accession number: P55634
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: October 1, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome, Transposable element

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3