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P55634

- Y4RA_RHISN

UniProt

P55634 - Y4RA_RHISN

Protein

Putative integrase/recombinase y4rA

Gene

NGR_a01860

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 74 (01 Oct 2014)
      Sequence version 1 (01 Nov 1997)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei389 – 3891O-(3'-phospho-DNA)-tyrosine intermediateBy similarity

    GO - Molecular functioni

    1. DNA binding Source: InterPro

    GO - Biological processi

    1. DNA integration Source: UniProtKB-KW
    2. DNA recombination Source: UniProtKB-KW
    3. establishment of integrated proviral latency Source: UniProtKB-KW
    4. viral entry into host cell Source: UniProtKB-KW

    Keywords - Biological processi

    DNA integration, DNA recombination, Viral genome integration, Virus entry into host cell

    Enzyme and pathway databases

    BioCyciSFRE394:GBYN-6237-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative integrase/recombinase y4rA
    Gene namesi
    Ordered Locus Names:NGR_a01860
    ORF Names:y4rA
    Encoded oniPlasmid sym pNGR234a0 Publication
    OrganismiRhizobium sp. (strain NGR234)
    Taxonomic identifieri394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001054: Plasmid sym pNGR234a

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 409409Putative integrase/recombinase y4rAPRO_0000197577Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi394.NGR_a01860.

    Structurei

    3D structure databases

    ProteinModelPortaliP55634.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the 'phage' integrase family.Curated

    Phylogenomic databases

    eggNOGiCOG0582.
    HOGENOMiHOG000224853.
    OMAiTHAIAGM.
    OrthoDBiEOG6N946B.

    Family and domain databases

    Gene3Di1.10.150.130. 1 hit.
    1.10.443.10. 1 hit.
    InterProiIPR011010. DNA_brk_join_enz.
    IPR013762. Integrase-like_cat-core.
    IPR002104. Integrase_catalytic.
    IPR023109. Integrase_recombinase_N.
    IPR004107. Integrase_SAM-like_N.
    [Graphical view]
    PfamiPF02899. Phage_int_SAM_1. 1 hit.
    PF00589. Phage_integrase. 1 hit.
    [Graphical view]
    SUPFAMiSSF56349. SSF56349. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P55634-1 [UniParc]FASTAAdd to Basket

    « Hide

    MKYFVNADFA LSRPPEGPVA IYIIPFAEWL VDRGYGLVST RNQVLMAAGF    50
    SSWLRQKGIG LSDINGEHAG RYLLDRVQRP KLGDDAALRH LLAFLRSQNA 100
    IAEEIEVDHN PSAVEQHVQA YERHLRDARA LSRQTIINYR PVVRDFLSFR 150
    FGDGEISLAQ LRAADVTDFV QKKVSRLNMR RAKIVTTALR SFLSYARYRG 200
    DITSDLAAAV PIVANWSLSS IPRAIGRDDV SRLLSSIDRD TPIGCRDYAM 250
    ILALARLGLR SSEVVTLELD DIDWVAGRIR VRGKHGRNEL PLPADVGEAI 300
    ADYLWRARPR NASRRVFLRD KAPIRGFVGP SGLGSIVRRS LKRTGIDSPT 350
    KGTHQFRHGL ASEMLRGGAS LGEIGEVLGH RHVQTTAIYA KVDLDALRTL 400
    ALPWPGEAQ 409
    Length:409
    Mass (Da):45,528
    Last modified:November 1, 1997 - v1
    Checksum:iEC531CCC43C84B36
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB92467.1.
    RefSeqiNP_444039.1. NC_000914.2.
    WP_010875220.1. NC_000914.2.

    Genome annotation databases

    EnsemblBacteriaiAAB92467; AAB92467; NGR_a01860.
    GeneIDi962535.
    KEGGirhi:NGR_a01860.
    PATRICi32301097. VBIRhiSp122450_0184.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB92467.1 .
    RefSeqi NP_444039.1. NC_000914.2.
    WP_010875220.1. NC_000914.2.

    3D structure databases

    ProteinModelPortali P55634.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 394.NGR_a01860.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB92467 ; AAB92467 ; NGR_a01860 .
    GeneIDi 962535.
    KEGGi rhi:NGR_a01860.
    PATRICi 32301097. VBIRhiSp122450_0184.

    Phylogenomic databases

    eggNOGi COG0582.
    HOGENOMi HOG000224853.
    OMAi THAIAGM.
    OrthoDBi EOG6N946B.

    Enzyme and pathway databases

    BioCyci SFRE394:GBYN-6237-MONOMER.

    Family and domain databases

    Gene3Di 1.10.150.130. 1 hit.
    1.10.443.10. 1 hit.
    InterProi IPR011010. DNA_brk_join_enz.
    IPR013762. Integrase-like_cat-core.
    IPR002104. Integrase_catalytic.
    IPR023109. Integrase_recombinase_N.
    IPR004107. Integrase_SAM-like_N.
    [Graphical view ]
    Pfami PF02899. Phage_int_SAM_1. 1 hit.
    PF00589. Phage_integrase. 1 hit.
    [Graphical view ]
    SUPFAMi SSF56349. SSF56349. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Molecular basis of symbiosis between Rhizobium and legumes."
      Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
      Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.

    Entry informationi

    Entry nameiY4RA_RHISN
    AccessioniPrimary (citable) accession number: P55634
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 74 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Plasmid, Reference proteome, Transposable element

    Documents

    1. Rhizobium plasmid pNGR234a
      Rhizobium plasmid pNGR234a: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3