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P55634 (Y4RA_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 72. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Putative integrase/recombinase y4rA
Gene names
Ordered Locus Names:NGR_a01860
ORF Names:y4rA
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length409 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the 'phage' integrase family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 409409Putative integrase/recombinase y4rA
PRO_0000197577

Sites

Active site3891O-(3'-phospho-DNA)-tyrosine intermediate By similarity

Sequences

Sequence LengthMass (Da)Tools
P55634 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: EC531CCC43C84B36

FASTA40945,528
        10         20         30         40         50         60 
MKYFVNADFA LSRPPEGPVA IYIIPFAEWL VDRGYGLVST RNQVLMAAGF SSWLRQKGIG 

        70         80         90        100        110        120 
LSDINGEHAG RYLLDRVQRP KLGDDAALRH LLAFLRSQNA IAEEIEVDHN PSAVEQHVQA 

       130        140        150        160        170        180 
YERHLRDARA LSRQTIINYR PVVRDFLSFR FGDGEISLAQ LRAADVTDFV QKKVSRLNMR 

       190        200        210        220        230        240 
RAKIVTTALR SFLSYARYRG DITSDLAAAV PIVANWSLSS IPRAIGRDDV SRLLSSIDRD 

       250        260        270        280        290        300 
TPIGCRDYAM ILALARLGLR SSEVVTLELD DIDWVAGRIR VRGKHGRNEL PLPADVGEAI 

       310        320        330        340        350        360 
ADYLWRARPR NASRRVFLRD KAPIRGFVGP SGLGSIVRRS LKRTGIDSPT KGTHQFRHGL 

       370        380        390        400 
ASEMLRGGAS LGEIGEVLGH RHVQTTAIYA KVDLDALRTL ALPWPGEAQ 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB92467.1.
RefSeqNP_444039.1. NC_000914.2.

3D structure databases

ProteinModelPortalP55634.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a01860.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB92467; AAB92467; NGR_a01860.
GeneID962535.
KEGGrhi:NGR_a01860.
PATRIC32301097. VBIRhiSp122450_0184.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0582.
HOGENOMHOG000224853.
OMATHAIAGM.
OrthoDBEOG6N946B.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6237-MONOMER.

Family and domain databases

Gene3D1.10.150.130. 1 hit.
1.10.443.10. 1 hit.
InterProIPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
IPR023109. Integrase_recombinase_N.
IPR004107. Integrase_SAM-like_N.
[Graphical view]
PfamPF02899. Phage_int_SAM_1. 1 hit.
PF00589. Phage_integrase. 1 hit.
[Graphical view]
SUPFAMSSF56349. SSF56349. 1 hit.
ProtoNetSearch...

Entry information

Entry nameY4RA_RHISN
AccessionPrimary (citable) accession number: P55634
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: May 14, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names