SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P55634

- Y4RA_RHISN

UniProt

P55634 - Y4RA_RHISN

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Putative integrase/recombinase y4rA
Gene
NGR_a01860, y4rA
Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei389 – 3891O-(3'-phospho-DNA)-tyrosine intermediate By similarity

GO - Molecular functioni

  1. DNA binding Source: InterPro

GO - Biological processi

  1. DNA integration Source: UniProtKB-KW
  2. DNA recombination Source: UniProtKB-KW
  3. establishment of integrated proviral latency Source: UniProtKB-KW
  4. viral entry into host cell Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

DNA integration, DNA recombination, Viral genome integration, Virus entry into host cell

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6237-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative integrase/recombinase y4rA
Gene namesi
Ordered Locus Names:NGR_a01860
ORF Names:y4rA
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 409409Putative integrase/recombinase y4rA
PRO_0000197577Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a01860.

Structurei

3D structure databases

ProteinModelPortaliP55634.

Family & Domainsi

Sequence similaritiesi

Belongs to the 'phage' integrase family.

Phylogenomic databases

eggNOGiCOG0582.
HOGENOMiHOG000224853.
OMAiTHAIAGM.
OrthoDBiEOG6N946B.

Family and domain databases

Gene3Di1.10.150.130. 1 hit.
1.10.443.10. 1 hit.
InterProiIPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
IPR023109. Integrase_recombinase_N.
IPR004107. Integrase_SAM-like_N.
[Graphical view]
PfamiPF02899. Phage_int_SAM_1. 1 hit.
PF00589. Phage_integrase. 1 hit.
[Graphical view]
SUPFAMiSSF56349. SSF56349. 1 hit.

Sequencei

Sequence statusi: Complete.

P55634-1 [UniParc]FASTAAdd to Basket

« Hide

MKYFVNADFA LSRPPEGPVA IYIIPFAEWL VDRGYGLVST RNQVLMAAGF    50
SSWLRQKGIG LSDINGEHAG RYLLDRVQRP KLGDDAALRH LLAFLRSQNA 100
IAEEIEVDHN PSAVEQHVQA YERHLRDARA LSRQTIINYR PVVRDFLSFR 150
FGDGEISLAQ LRAADVTDFV QKKVSRLNMR RAKIVTTALR SFLSYARYRG 200
DITSDLAAAV PIVANWSLSS IPRAIGRDDV SRLLSSIDRD TPIGCRDYAM 250
ILALARLGLR SSEVVTLELD DIDWVAGRIR VRGKHGRNEL PLPADVGEAI 300
ADYLWRARPR NASRRVFLRD KAPIRGFVGP SGLGSIVRRS LKRTGIDSPT 350
KGTHQFRHGL ASEMLRGGAS LGEIGEVLGH RHVQTTAIYA KVDLDALRTL 400
ALPWPGEAQ 409
Length:409
Mass (Da):45,528
Last modified:November 1, 1997 - v1
Checksum:iEC531CCC43C84B36
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB92467.1.
RefSeqiNP_444039.1. NC_000914.2.
WP_010875220.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB92467; AAB92467; NGR_a01860.
GeneIDi962535.
KEGGirhi:NGR_a01860.
PATRICi32301097. VBIRhiSp122450_0184.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB92467.1 .
RefSeqi NP_444039.1. NC_000914.2.
WP_010875220.1. NC_000914.2.

3D structure databases

ProteinModelPortali P55634.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_a01860.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB92467 ; AAB92467 ; NGR_a01860 .
GeneIDi 962535.
KEGGi rhi:NGR_a01860.
PATRICi 32301097. VBIRhiSp122450_0184.

Phylogenomic databases

eggNOGi COG0582.
HOGENOMi HOG000224853.
OMAi THAIAGM.
OrthoDBi EOG6N946B.

Enzyme and pathway databases

BioCyci SFRE394:GBYN-6237-MONOMER.

Family and domain databases

Gene3Di 1.10.150.130. 1 hit.
1.10.443.10. 1 hit.
InterProi IPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
IPR023109. Integrase_recombinase_N.
IPR004107. Integrase_SAM-like_N.
[Graphical view ]
Pfami PF02899. Phage_int_SAM_1. 1 hit.
PF00589. Phage_integrase. 1 hit.
[Graphical view ]
SUPFAMi SSF56349. SSF56349. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4RA_RHISN
AccessioniPrimary (citable) accession number: P55634
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: September 3, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Transposable element

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi