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P55632

- Y4QK_RHISN

UniProt

P55632 - Y4QK_RHISN

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Protein
Putative integrase/recombinase y4qK
Gene
NGR_a01870, y4qK
Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

May function as an integrase.

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei275 – 2751O-(3'-phospho-DNA)-tyrosine intermediate By similarity

GO - Molecular functioni

  1. DNA binding Source: InterPro

GO - Biological processi

  1. DNA integration Source: UniProtKB-KW
  2. DNA recombination Source: UniProtKB-KW
  3. establishment of integrated proviral latency Source: UniProtKB-KW
  4. viral entry into host cell Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

DNA integration, DNA recombination, Viral genome integration, Virus entry into host cell

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6238-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative integrase/recombinase y4qK
Gene namesi
Ordered Locus Names:NGR_a01870
ORF Names:y4qK
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 308308Putative integrase/recombinase y4qK
PRO_0000197574Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a01870.

Structurei

3D structure databases

ProteinModelPortaliP55632.

Family & Domainsi

Sequence similaritiesi

Belongs to the 'phage' integrase family.

Phylogenomic databases

eggNOGiCOG0582.
HOGENOMiHOG000045295.
OMAiTLERDWV.
OrthoDBiEOG6PZXFP.

Family and domain databases

Gene3Di1.10.150.130. 1 hit.
1.10.443.10. 1 hit.
InterProiIPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
IPR023109. Integrase_recombinase_N.
IPR004107. Integrase_SAM-like_N.
[Graphical view]
PfamiPF02899. Phage_int_SAM_1. 1 hit.
PF00589. Phage_integrase. 1 hit.
[Graphical view]
SUPFAMiSSF56349. SSF56349. 1 hit.

Sequencei

Sequence statusi: Complete.

P55632-1 [UniParc]FASTAAdd to Basket

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MGRLFGSLFH QTEELVMTPL RQRMSEDMQV RNFSLNTQLS YLRQVSLFAR    50
HFGKAPDLLG REDIRTYQVY LANEKKLAPN SIHIAIAALR FFFSVTLERD 100
WVPAEVLPLP KKPQKLPIIL SPDEVQHFLG CVLDLKHHAI LTTCYAAGLR 150
ISEAVQLKPT DIDSQRMVVR VEQGKGQKDR YVMLSPKLLE ILRDYWRMPR 200
PKEWLFPGDR AGHPITRDAV GQACAKAHDL SRLSKPVTPH SLRHAFAVHL 250
LEAGADVRTI QLLLGHRSLA TTAHYLRIAT NKVCATSSPF ELLPRPAPTP 300
PPAKPEYF 308
Length:308
Mass (Da):34,958
Last modified:November 1, 1997 - v1
Checksum:iEC988118DEF98C15
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB92466.1.
RefSeqiNP_444038.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB92466; AAB92466; NGR_a01870.
GeneIDi962408.
KEGGirhi:NGR_a01870.
PATRICi32301101. VBIRhiSp122450_0186.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB92466.1 .
RefSeqi NP_444038.1. NC_000914.2.

3D structure databases

ProteinModelPortali P55632.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_a01870.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB92466 ; AAB92466 ; NGR_a01870 .
GeneIDi 962408.
KEGGi rhi:NGR_a01870.
PATRICi 32301101. VBIRhiSp122450_0186.

Phylogenomic databases

eggNOGi COG0582.
HOGENOMi HOG000045295.
OMAi TLERDWV.
OrthoDBi EOG6PZXFP.

Enzyme and pathway databases

BioCyci SFRE394:GBYN-6238-MONOMER.

Family and domain databases

Gene3Di 1.10.150.130. 1 hit.
1.10.443.10. 1 hit.
InterProi IPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
IPR023109. Integrase_recombinase_N.
IPR004107. Integrase_SAM-like_N.
[Graphical view ]
Pfami PF02899. Phage_int_SAM_1. 1 hit.
PF00589. Phage_integrase. 1 hit.
[Graphical view ]
SUPFAMi SSF56349. SSF56349. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4QK_RHISN
AccessioniPrimary (citable) accession number: P55632
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: May 14, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Transposable element

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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