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Protein

Putative transposase y4qE

Gene

NGR_a01930

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW
  2. transposase activity Source: InterPro

GO - Biological processi

  1. transposition, DNA-mediated Source: InterPro
Complete GO annotation...

Keywords - Biological processi

DNA recombination, Transposition

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6244-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative transposase y4qE
Gene namesi
Ordered Locus Names:NGR_a01930
ORF Names:y4qE
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 390390Putative transposase y4qEPRO_0000075456Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a01930.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG3547.
HOGENOMiHOG000226184.
OMAiIAWKAQV.
OrthoDBiEOG6P337F.

Family and domain databases

InterProiIPR003346. Transposase_20.
IPR002525. Transposase_N.
[Graphical view]
PfamiPF01548. DEDD_Tnp_IS110. 1 hit.
PF02371. Transposase_20. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55626-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSFFGSEVAR PRLFFRGLLG QAGPILITGG RAVADYREAF VGIDVAKLKN
60 70 80 90 100
AIAVAESGRN GEVRYWGEVE ASDAGIRRAI KQITAKFEHV YFCYEAGPTG
110 120 130 140 150
YGLYRLIRSL GHECIVVAPS LIPRKPGDRV KTNRRDAISL ARLLRAGELT
160 170 180 190 200
AVWVPDEDHE AMRDLVRART SAVETLRTHR QQVNAFMLKH GRIYPGKRSW
210 220 230 240 250
TMRYLRWLQE QHFDHPAHQI ALQEMVETVI AEFVPHWSLA AVVCALRALR
260 270 280 290 300
GVDLIAAVTF ATEVGDAGRF ESPRQLMGYL GLVPGERSTG ETTKRIGITK
310 320 330 340 350
AGNSRVRTLL VECAWTYRYP PRIGKRKLYR LEEVSSSVRE IAWKAQTRLT
360 370 380 390
ARYRMLSARG KKSTVVCTAV ARELAGFMWA IAREARQTTS
Length:390
Mass (Da):43,830
Last modified:November 1, 1997 - v1
Checksum:i327A7028ADF92CAA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91829.1.
RefSeqiNP_444032.1. NC_000914.2.
WP_010875227.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91829; AAB91829; NGR_a01930.
GeneIDi962406.
KEGGirhi:NGR_a01930.
PATRICi32301117. VBIRhiSp122450_0194.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91829.1.
RefSeqiNP_444032.1. NC_000914.2.
WP_010875227.1. NC_000914.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi394.NGR_a01930.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91829; AAB91829; NGR_a01930.
GeneIDi962406.
KEGGirhi:NGR_a01930.
PATRICi32301117. VBIRhiSp122450_0194.

Phylogenomic databases

eggNOGiCOG3547.
HOGENOMiHOG000226184.
OMAiIAWKAQV.
OrthoDBiEOG6P337F.

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6244-MONOMER.

Family and domain databases

InterProiIPR003346. Transposase_20.
IPR002525. Transposase_N.
[Graphical view]
PfamiPF01548. DEDD_Tnp_IS110. 1 hit.
PF02371. Transposase_20. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4QE_RHISN
AccessioniPrimary (citable) accession number: P55626
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: January 7, 2015
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome, Transposable element

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.