P55603 (Y4OR_RHISN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Probable ABC transporter permease protein y4oR

Gene names

Ordered Locus Names:	NGR_a02180
ORF Names:	y4oR

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium › Sinorhizobium fredii group › Rhizobium fredii

Protein attributes

Sequence length	277 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane.
Subcellular location	Cell inner membrane; Multi-pass membrane protein Potential.
Sequence similarities	Belongs to the binding-protein-dependent transport system permease family. MalFG subfamily. Contains 1 ABC transmembrane type-1 domain.

Ontologies

Keywords
Biological process	Transport
Cellular component	Cell inner membrane Cell membrane Membrane
Domain	Transmembrane Transmembrane helix
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
Cellular_component	integral to membrane Inferred from electronic annotation. Source: UniProtKB-KW plasma membrane Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	transporter activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 277	277	Probable ABC transporter permease protein y4oR		PRO_0000060296
Regions
	Transmembrane	15 – 35	21	Helical; Potential
	Transmembrane	79 – 99	21	Helical; Potential
	Transmembrane	109 – 129	21	Helical; Potential
	Transmembrane	140 – 160	21	Helical; Potential
	Transmembrane	189 – 209	21	Helical; Potential
	Transmembrane	213 – 233	21	Helical; Potential
	Transmembrane	242 – 262	21	Helical; Potential
	Domain	74 – 263	190	ABC transmembrane type-1

Sequences

	Sequence		Length	Mass (Da)
	P55603 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 48BB63DD615B1D3D	FASTA	277	30,577
	10 20 30 40 50 60 MAISSNTSRT TRKLLWTLFW CVLAFVYLFP YTWMVLTGFR HGVDTISMPP RFIFEPTLAG 70 80 90 100 110 120 FKHLFEVTGF QKYIINSAVV TIVSVVLVIA VSAPAAYALA HVTKRGGTLL VAILVARIIP 130 140 150 160 170 180 GIAIGVPVYL LATRLHQLDT YQALIIINVA VNIPFAIWLM RSFFMEVHPT LREAAISDGC 190 200 210 220 230 240 SEWQVFTKIM MPLVLGGMLA TAVFVFIAVW NEFLFALILT TSVSPTAPLA MLGFRTQYGV 250 260 270 QWDAVGAAAF LVSTPVIAFA FIMQRYLVQG LTMGSVK

References

[1]

"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

[2]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U00090 Genomic DNA. Translation: AAB91804.1.
RefSeq	NP_444007.1. NC_000914.2.
3D structure databases
ProteinModelPortal	P55603.
ModBase	Search...
Protein-protein interaction databases
STRING	394.NGR_a02180.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAB91804; AAB91804; NGR_a02180.
GeneID	962207.
KEGG	rhi:NGR_a02180.
PATRIC	32301187. VBIRhiSp122450_0229.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	COG0395.
HOGENOM	HOG000220526.
KO	K02026.
Family and domain databases
InterPro	IPR000515. BPD_transp. [Graphical view]
Pfam	PF00528. BPD_transp_1. 1 hit. [Graphical view]
PROSITE	PS50928. ABC_TM1. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y4OR_RHISN

Accession

Primary (citable) accession number: P55603

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	May 1, 2013
This is version 68 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program