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Protein

Uncharacterized HTH-type transcriptional regulator y4mQ

Gene

NGR_a02420

Organism
Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi22 – 42H-T-H motifPROSITE-ProRule annotationAdd BLAST21

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized HTH-type transcriptional regulator y4mQ
Gene namesi
Ordered Locus Names:NGR_a02420
ORF Names:y4mQ
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiSinorhizobium fredii (strain NBRC 101917 / NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000001054 Componenti: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001058271 – 298Uncharacterized HTH-type transcriptional regulator y4mQAdd BLAST298

Structurei

3D structure databases

ProteinModelPortaliP55576.
SMRiP55576.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 62HTH lysR-typePROSITE-ProRule annotationAdd BLAST58

Phylogenomic databases

HOGENOMiHOG000233528.
OMAiLACDLIH.
OrthoDBiPOG091H04V5.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiView protein in InterPro
IPR005119. LysR_subst-bd.
IPR000847. Tscrpt_reg_HTH_LysR.
IPR036388. WH-like_DNA-bd_sf.
IPR036390. WH_DNA-bd_sf.
PfamiView protein in Pfam
PF00126. HTH_1. 1 hit.
PF03466. LysR_substrate. 1 hit.
PRINTSiPR00039. HTHLYSR.
SUPFAMiSSF46785. SSF46785. 1 hit.
PROSITEiView protein in PROSITE
PS50931. HTH_LYSR. 1 hit.

Sequencei

Sequence statusi: Complete.

P55576-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLQTTSLSAM RIFEAAARLG SFRAAAEELN LSPSAVSHAI MRLERDLGVA
60 70 80 90 100
LFERTTRSVS LTVAGQTLLN HASNAFEELR RGVEQISSNK AQLLRLHCAP
110 120 130 140 150
SFAAQVLSPR LPQFLKENPG IEVRVAASTN YARFVDGLFD ADIVYGEPLN
160 170 180 190 200
REDLIVIPLS EEIVLPLCAP DLAHQIKSPR DLFHQPLIRS DLKRIQWIDW
210 220 230 240 250
FEANDLGPPP SPSMSFDRSF LAVDAAVNGL GIALESDVLA RRELESGKLV
260 270 280 290
RPLHRICRDN RYIGHYLAYP KSGSQRRLAR AFADWLTREC QPASTGSE
Length:298
Mass (Da):33,126
Last modified:November 1, 1997 - v1
Checksum:iFC66422A5641B0EC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91780.1.
RefSeqiNP_443983.1. NC_000914.2.
WP_010875267.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91780; AAB91780; NGR_a02420.
GeneIDi962372.
KEGGirhi:NGR_a02420.
PATRICifig|394.7.peg.252.

Similar proteinsi

Entry informationi

Entry nameiY4MQ_SINFN
AccessioniPrimary (citable) accession number: P55576
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: January 31, 2018
This is version 86 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names