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P55574 (Y4MO_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified February 19, 2014. Version 76. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Putative uncharacterized transketolase family protein y4mO
Gene names
Ordered Locus Names:NGR_a02440
ORF Names:y4mO
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length279 AA.
Sequence statusComplete.
Protein existenceUncertain

General annotation (Comments)

Cofactor

Binds 1 thiamine pyrophosphate per subunit By similarity.

Subcellular location

Cell membrane; Multi-pass membrane protein Potential.

Sequence similarities

Belongs to the transketolase family.

Caution

Could be the product of a pseudogene. Corresponds to the N-terminal of members of this family.

Ontologies

Keywords
   Cellular componentCell membrane
Membrane
   DomainTransmembrane
Transmembrane helix
   LigandThiamine pyrophosphate
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Cellular_componentintegral component of membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 279279Putative uncharacterized transketolase family protein y4mO
PRO_0000191913

Regions

Transmembrane31 – 5121Helical; Potential
Transmembrane67 – 8721Helical; Potential
Transmembrane115 – 13521Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
P55574 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: FE48B6DC956D5462

FASTA27930,743
        10         20         30         40         50         60 
MAQIGHNISL PERARRIRRH ALRMGEVQGQ GYIAQALGIA DVLAVAYFHA TTYRPDDPEW 

        70         80         90        100        110        120 
EGRDRFLLSI GHYAIALYAA LIEAKIIPED ELETYGADDS RLPMSGMAAY TPGMEITGGS 

       130        140        150        160        170        180 
LGHGLGIAVG MSLALKRKGS RSFVYNLFSD GELDEGSTWE AAMSAGSYKL DNLIGIVDVN 

       190        200        210        220        230        240 
QMQADGPSLG VLNFEPLGPK FEAFGWYVQR IDGNDIDALV DAFDNARQHR HPQPRIIICD 

       250        260        270 
TKMAKGVPFL EARERNHFLR VEPQEWAEAI RIIDAGVTA 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB91778.1.
RefSeqNP_443981.1. NC_000914.2.

3D structure databases

ProteinModelPortalP55574.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a02440.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91778; AAB91778; NGR_a02440.
GeneID962368.
KEGGrhi:NGR_a02440.
PATRIC32301237. VBIRhiSp122450_0254.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3959.
HOGENOMHOG000243880.
KOK00615.
OMAFHGKAPN.
OrthoDBEOG69GZPF.
ProtClustDBCLSK864385.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6295-MONOMER.

Family and domain databases

InterProIPR005474. Transketolase_N.
[Graphical view]
PfamPF00456. Transketolase_N. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY4MO_RHISN
AccessionPrimary (citable) accession number: P55574
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: February 19, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names