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P55574

- Y4MO_RHISN

UniProt

P55574 - Y4MO_RHISN

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Protein

Putative uncharacterized transketolase family protein y4mO

Gene

NGR_a02440

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein uncertaini

Functioni

Cofactori

thiamine diphosphateBy similarityNote: Binds 1 thiamine pyrophosphate per subunit.By similarity

Keywords - Ligandi

Thiamine pyrophosphate

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-4512-MONOMER.
SFRE394:GBYN-6295-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized transketolase family protein y4mO
Gene namesi
Ordered Locus Names:NGR_a02440
ORF Names:y4mO
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei31 – 5121HelicalSequence AnalysisAdd
BLAST
Transmembranei67 – 8721HelicalSequence AnalysisAdd
BLAST
Transmembranei115 – 13521HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 279279Putative uncharacterized transketolase family protein y4mOPRO_0000191913Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a02440.

Structurei

3D structure databases

ProteinModelPortaliP55574.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the transketolase family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG3959.
HOGENOMiHOG000243880.
KOiK00615.
OMAiRKDIVTM.
OrthoDBiEOG69GZPF.

Family and domain databases

Gene3Di3.40.50.970. 1 hit.
InterProiIPR029061. THDP-binding.
IPR005474. Transketolase_N.
[Graphical view]
PfamiPF00456. Transketolase_N. 1 hit.
[Graphical view]
SUPFAMiSSF52518. SSF52518. 1 hit.

Sequencei

Sequence statusi: Complete.

P55574-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAQIGHNISL PERARRIRRH ALRMGEVQGQ GYIAQALGIA DVLAVAYFHA
60 70 80 90 100
TTYRPDDPEW EGRDRFLLSI GHYAIALYAA LIEAKIIPED ELETYGADDS
110 120 130 140 150
RLPMSGMAAY TPGMEITGGS LGHGLGIAVG MSLALKRKGS RSFVYNLFSD
160 170 180 190 200
GELDEGSTWE AAMSAGSYKL DNLIGIVDVN QMQADGPSLG VLNFEPLGPK
210 220 230 240 250
FEAFGWYVQR IDGNDIDALV DAFDNARQHR HPQPRIIICD TKMAKGVPFL
260 270
EARERNHFLR VEPQEWAEAI RIIDAGVTA
Length:279
Mass (Da):30,743
Last modified:November 1, 1997 - v1
Checksum:iFE48B6DC956D5462
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91778.1.
RefSeqiNP_443981.1. NC_000914.2.
WP_010875269.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91778; AAB91778; NGR_a02440.
GeneIDi962368.
KEGGirhi:NGR_a02440.
PATRICi32301237. VBIRhiSp122450_0254.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91778.1 .
RefSeqi NP_443981.1. NC_000914.2.
WP_010875269.1. NC_000914.2.

3D structure databases

ProteinModelPortali P55574.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_a02440.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB91778 ; AAB91778 ; NGR_a02440 .
GeneIDi 962368.
KEGGi rhi:NGR_a02440.
PATRICi 32301237. VBIRhiSp122450_0254.

Phylogenomic databases

eggNOGi COG3959.
HOGENOMi HOG000243880.
KOi K00615.
OMAi RKDIVTM.
OrthoDBi EOG69GZPF.

Enzyme and pathway databases

BioCyci RETL1328306-WGS:GSTH-4512-MONOMER.
SFRE394:GBYN-6295-MONOMER.

Family and domain databases

Gene3Di 3.40.50.970. 1 hit.
InterProi IPR029061. THDP-binding.
IPR005474. Transketolase_N.
[Graphical view ]
Pfami PF00456. Transketolase_N. 1 hit.
[Graphical view ]
SUPFAMi SSF52518. SSF52518. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4MO_RHISN
AccessioniPrimary (citable) accession number: P55574
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 26, 2014
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene. Corresponds to the N-terminal of members of this family.Curated

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3