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Protein

Putative uncharacterized transketolase family protein y4mO

Gene

NGR_a02440

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein uncertaini

Functioni

Cofactori

thiamine diphosphateBy similarityNote: Binds 1 thiamine pyrophosphate per subunit.By similarity

Keywords - Ligandi

Thiamine pyrophosphate

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-4512-MONOMER.
SFRE394:GBYN-6295-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized transketolase family protein y4mO
Gene namesi
Ordered Locus Names:NGR_a02440
ORF Names:y4mO
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054 Componenti: Plasmid sym pNGR234a

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei31 – 5121HelicalSequence AnalysisAdd
BLAST
Transmembranei67 – 8721HelicalSequence AnalysisAdd
BLAST
Transmembranei115 – 13521HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. integral component of membrane Source: UniProtKB-KW
  2. plasma membrane Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 279279Putative uncharacterized transketolase family protein y4mOPRO_0000191913Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a02440.

Structurei

3D structure databases

ProteinModelPortaliP55574.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the transketolase family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiCOG3959.
HOGENOMiHOG000243880.
KOiK00615.
OMAiQIDGCTE.
OrthoDBiEOG69GZPF.

Family and domain databases

Gene3Di3.40.50.970. 1 hit.
InterProiIPR029061. THDP-binding.
IPR005474. Transketolase_N.
[Graphical view]
PfamiPF00456. Transketolase_N. 1 hit.
[Graphical view]
SUPFAMiSSF52518. SSF52518. 1 hit.

Sequencei

Sequence statusi: Complete.

P55574-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAQIGHNISL PERARRIRRH ALRMGEVQGQ GYIAQALGIA DVLAVAYFHA
60 70 80 90 100
TTYRPDDPEW EGRDRFLLSI GHYAIALYAA LIEAKIIPED ELETYGADDS
110 120 130 140 150
RLPMSGMAAY TPGMEITGGS LGHGLGIAVG MSLALKRKGS RSFVYNLFSD
160 170 180 190 200
GELDEGSTWE AAMSAGSYKL DNLIGIVDVN QMQADGPSLG VLNFEPLGPK
210 220 230 240 250
FEAFGWYVQR IDGNDIDALV DAFDNARQHR HPQPRIIICD TKMAKGVPFL
260 270
EARERNHFLR VEPQEWAEAI RIIDAGVTA
Length:279
Mass (Da):30,743
Last modified:November 1, 1997 - v1
Checksum:iFE48B6DC956D5462
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91778.1.
RefSeqiNP_443981.1. NC_000914.2.
WP_010875269.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91778; AAB91778; NGR_a02440.
GeneIDi962368.
KEGGirhi:NGR_a02440.
PATRICi32301237. VBIRhiSp122450_0254.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91778.1.
RefSeqiNP_443981.1. NC_000914.2.
WP_010875269.1. NC_000914.2.

3D structure databases

ProteinModelPortaliP55574.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi394.NGR_a02440.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91778; AAB91778; NGR_a02440.
GeneIDi962368.
KEGGirhi:NGR_a02440.
PATRICi32301237. VBIRhiSp122450_0254.

Phylogenomic databases

eggNOGiCOG3959.
HOGENOMiHOG000243880.
KOiK00615.
OMAiQIDGCTE.
OrthoDBiEOG69GZPF.

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-4512-MONOMER.
SFRE394:GBYN-6295-MONOMER.

Family and domain databases

Gene3Di3.40.50.970. 1 hit.
InterProiIPR029061. THDP-binding.
IPR005474. Transketolase_N.
[Graphical view]
PfamiPF00456. Transketolase_N. 1 hit.
[Graphical view]
SUPFAMiSSF52518. SSF52518. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4MO_RHISN
AccessioniPrimary (citable) accession number: P55574
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: April 29, 2015
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene. Corresponds to the N-terminal of members of this family.Curated

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.