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P55574

- Y4MO_RHISN

UniProt

P55574 - Y4MO_RHISN

Protein

Putative uncharacterized transketolase family protein y4mO

Gene

NGR_a02440

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein uncertaini
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    • History
      Entry version 80 (01 Oct 2014)
      Sequence version 1 (01 Nov 1997)
      Previous versions | rss
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    Functioni

    Cofactori

    Binds 1 thiamine pyrophosphate per subunit.By similarity

    Keywords - Ligandi

    Thiamine pyrophosphate

    Enzyme and pathway databases

    BioCyciRETL1328306-WGS:GSTH-4512-MONOMER.
    SFRE394:GBYN-6295-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative uncharacterized transketolase family protein y4mO
    Gene namesi
    Ordered Locus Names:NGR_a02440
    ORF Names:y4mO
    Encoded oniPlasmid sym pNGR234a0 Publication
    OrganismiRhizobium sp. (strain NGR234)
    Taxonomic identifieri394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001054: Plasmid sym pNGR234a

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW
    2. plasma membrane Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cell membrane, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 279279Putative uncharacterized transketolase family protein y4mOPRO_0000191913Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi394.NGR_a02440.

    Structurei

    3D structure databases

    ProteinModelPortaliP55574.
    ModBaseiSearch...
    MobiDBiSearch...

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei31 – 5121HelicalSequence AnalysisAdd
    BLAST
    Transmembranei67 – 8721HelicalSequence AnalysisAdd
    BLAST
    Transmembranei115 – 13521HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the transketolase family.Curated

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiCOG3959.
    HOGENOMiHOG000243880.
    KOiK00615.
    OMAiRKDIVTM.
    OrthoDBiEOG69GZPF.

    Family and domain databases

    Gene3Di3.40.50.970. 1 hit.
    InterProiIPR029061. THDP-binding.
    IPR005474. Transketolase_N.
    [Graphical view]
    PfamiPF00456. Transketolase_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF52518. SSF52518. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P55574-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAQIGHNISL PERARRIRRH ALRMGEVQGQ GYIAQALGIA DVLAVAYFHA    50
    TTYRPDDPEW EGRDRFLLSI GHYAIALYAA LIEAKIIPED ELETYGADDS 100
    RLPMSGMAAY TPGMEITGGS LGHGLGIAVG MSLALKRKGS RSFVYNLFSD 150
    GELDEGSTWE AAMSAGSYKL DNLIGIVDVN QMQADGPSLG VLNFEPLGPK 200
    FEAFGWYVQR IDGNDIDALV DAFDNARQHR HPQPRIIICD TKMAKGVPFL 250
    EARERNHFLR VEPQEWAEAI RIIDAGVTA 279
    Length:279
    Mass (Da):30,743
    Last modified:November 1, 1997 - v1
    Checksum:iFE48B6DC956D5462
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91778.1.
    RefSeqiNP_443981.1. NC_000914.2.

    Genome annotation databases

    EnsemblBacteriaiAAB91778; AAB91778; NGR_a02440.
    GeneIDi962368.
    KEGGirhi:NGR_a02440.
    PATRICi32301237. VBIRhiSp122450_0254.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91778.1 .
    RefSeqi NP_443981.1. NC_000914.2.

    3D structure databases

    ProteinModelPortali P55574.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 394.NGR_a02440.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB91778 ; AAB91778 ; NGR_a02440 .
    GeneIDi 962368.
    KEGGi rhi:NGR_a02440.
    PATRICi 32301237. VBIRhiSp122450_0254.

    Phylogenomic databases

    eggNOGi COG3959.
    HOGENOMi HOG000243880.
    KOi K00615.
    OMAi RKDIVTM.
    OrthoDBi EOG69GZPF.

    Enzyme and pathway databases

    BioCyci RETL1328306-WGS:GSTH-4512-MONOMER.
    SFRE394:GBYN-6295-MONOMER.

    Family and domain databases

    Gene3Di 3.40.50.970. 1 hit.
    InterProi IPR029061. THDP-binding.
    IPR005474. Transketolase_N.
    [Graphical view ]
    Pfami PF00456. Transketolase_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52518. SSF52518. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Molecular basis of symbiosis between Rhizobium and legumes."
      Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
      Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.

    Entry informationi

    Entry nameiY4MO_RHISN
    AccessioniPrimary (citable) accession number: P55574
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 80 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Caution

    Could be the product of a pseudogene. Corresponds to the N-terminal of members of this family.Curated

    Keywords - Technical termi

    Complete proteome, Plasmid, Reference proteome

    Documents

    1. Rhizobium plasmid pNGR234a
      Rhizobium plasmid pNGR234a: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3