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Protein

Putative uncharacterized transketolase family protein y4mN

Gene

NGR_a02450

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein uncertaini

Functioni

Cofactori

thiamine diphosphateBy similarityNote: Binds 1 thiamine pyrophosphate per subunit.By similarity

GO - Molecular functioni

  1. catalytic activity Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Thiamine pyrophosphate

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-2411-MONOMER.
RETL1328306-WGS:GSTH-4513-MONOMER.
SFRE394:GBYN-6296-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative uncharacterized transketolase family protein y4mN
Gene namesi
Ordered Locus Names:NGR_a02450
ORF Names:y4mN
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 345345Putative uncharacterized transketolase family protein y4mNPRO_0000191912Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a02450.

Structurei

3D structure databases

ProteinModelPortaliP55573.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the transketolase family.Curated

Phylogenomic databases

eggNOGiCOG3958.
HOGENOMiHOG000243869.
KOiK00615.
OMAiQGPVYMR.
OrthoDBiEOG69GZPF.

Family and domain databases

Gene3Di3.40.50.920. 1 hit.
3.40.50.970. 1 hit.
InterProiIPR029061. THDP-binding.
IPR009014. Transketo_C/Pyr-ferredox_oxred.
IPR005475. Transketolase-like_Pyr-bd.
IPR005476. Transketolase_C.
[Graphical view]
PfamiPF02779. Transket_pyr. 1 hit.
PF02780. Transketolase_C. 1 hit.
[Graphical view]
SMARTiSM00861. Transket_pyr. 1 hit.
[Graphical view]
SUPFAMiSSF52518. SSF52518. 1 hit.
SSF52922. SSF52922. 1 hit.

Sequencei

Sequence statusi: Complete.

P55573-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRRSKYERPA HLIGNAERPR LTTSAMIASI AGADQPTRPA PFGHALSALA
60 70 80 90 100
EKDDRVVGLS ADLAKYTDLH VFRAAHPDRF YQMGMAEQLL MMSAAGMARE
110 120 130 140 150
GLQPWVTTYA VFASRRAYDF ICLAIAEEML DVKVVCALPG LTTGYGPSHQ
160 170 180 190 200
ATEDIAMFRG MPNLTIIDPC DASEIEQAVP AIAAHEGPVY MRLLRGNVPL
210 220 230 240 250
VLEEYGYRFE LGKAKLLRDG RDTLIISSGL MTMRALEAAE ELRKNGIDAG
260 270 280 290 300
VLHVPTIKPL DEATILAECA RQGRLVVVAE NHTVIGGLGE AVAATLMRSA
310 320 330 340
VRPAAFRQIG LPDAFLEAGA LPTLHDMYGI STTKIVAQIK EWLDE
Length:345
Mass (Da):37,509
Last modified:November 1, 1997 - v1
Checksum:iE6711A19D2D4253D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91777.1.
RefSeqiNP_443980.1. NC_000914.2.
WP_010875270.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91777; AAB91777; NGR_a02450.
GeneIDi962370.
KEGGirhi:NGR_a02450.
PATRICi32301239. VBIRhiSp122450_0255.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91777.1.
RefSeqiNP_443980.1. NC_000914.2.
WP_010875270.1. NC_000914.2.

3D structure databases

ProteinModelPortaliP55573.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi394.NGR_a02450.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91777; AAB91777; NGR_a02450.
GeneIDi962370.
KEGGirhi:NGR_a02450.
PATRICi32301239. VBIRhiSp122450_0255.

Phylogenomic databases

eggNOGiCOG3958.
HOGENOMiHOG000243869.
KOiK00615.
OMAiQGPVYMR.
OrthoDBiEOG69GZPF.

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-2411-MONOMER.
RETL1328306-WGS:GSTH-4513-MONOMER.
SFRE394:GBYN-6296-MONOMER.

Family and domain databases

Gene3Di3.40.50.920. 1 hit.
3.40.50.970. 1 hit.
InterProiIPR029061. THDP-binding.
IPR009014. Transketo_C/Pyr-ferredox_oxred.
IPR005475. Transketolase-like_Pyr-bd.
IPR005476. Transketolase_C.
[Graphical view]
PfamiPF02779. Transket_pyr. 1 hit.
PF02780. Transketolase_C. 1 hit.
[Graphical view]
SMARTiSM00861. Transket_pyr. 1 hit.
[Graphical view]
SUPFAMiSSF52518. SSF52518. 1 hit.
SSF52922. SSF52922. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4MN_RHISN
AccessioniPrimary (citable) accession number: P55573
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: March 4, 2015
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Caution

Could be the product of a pseudogene. Corresponds to the C-terminal of members of this family.Curated

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.