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Protein

Probable ABC transporter permease protein y4mJ

Gene

NGR_a02490

Organism
Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Probably part of the binding-protein-dependent transport system y4mIJK. This system probably transports a sugar. Probably responsible for the translocation of the substrate across the membrane.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Sugar transport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Probable ABC transporter permease protein y4mJ
Gene namesi
Ordered Locus Names:NGR_a02490
ORF Names:y4mJ
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiSinorhizobium fredii (strain NBRC 101917 / NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000001054 Componenti: Plasmid sym pNGR234a

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei30 – 50HelicalSequence analysisAdd BLAST21
Transmembranei62 – 82HelicalSequence analysisAdd BLAST21
Transmembranei84 – 104HelicalSequence analysisAdd BLAST21
Transmembranei110 – 130HelicalSequence analysisAdd BLAST21
Transmembranei133 – 153HelicalSequence analysisAdd BLAST21
Transmembranei175 – 195HelicalSequence analysisAdd BLAST21
Transmembranei228 – 248HelicalSequence analysisAdd BLAST21
Transmembranei253 – 273HelicalSequence analysisAdd BLAST21
Transmembranei274 – 294HelicalSequence analysisAdd BLAST21
Transmembranei300 – 320HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000602941 – 333Probable ABC transporter permease protein y4mJAdd BLAST333

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

HOGENOMiHOG000212232.
KOiK10440.
OMAiLMVALEY.
OrthoDBiPOG091H0H3J.

Family and domain databases

InterProiIPR001851. ABC_transp_permease.
[Graphical view]
PfamiPF02653. BPD_transp_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55569-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTKTIIDQAG ATPGAIRTRE GLVSAYRTEL AIAGAIVLLV LAVGTQVPQA
60 70 80 90 100
MSWGNFANIT QAGAPLIIMS LGVLLVVITG GIDLSVGSVF SLTGMVTAQA
110 120 130 140 150
MASGLDVSAA LIGLGVGLVF GSINGFLVTV AGLAPFVVTL ITFAVAGSLA
160 170 180 190 200
FIVTNGRSMP IGDPDFWLLN SGSLIPGVPN YILFCIVLLV VIEIFLKKMV
210 220 230 240 250
AGRWFYAVGS SAAAARLLGI PVKRTQFFAY VASSLLASFS GLLTISYILN
260 270 280 290 300
AESTAGSSLM LQAIAAVVIG GASLLGGTGT AVGAVLGALM ITVIQNGVNL
310 320 330
IGINSFWQGS VTGLAILIAV LIDRFSKSRR GAV
Length:333
Mass (Da):33,907
Last modified:November 1, 1997 - v1
Checksum:i88E7E95F48E638C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91773.1.
RefSeqiNP_443976.1. NC_000914.2.
WP_010875274.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91773; AAB91773; NGR_a02490.
GeneIDi962622.
KEGGirhi:NGR_a02490.
PATRICi32301247. VBIRhiSp122450_0259.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91773.1.
RefSeqiNP_443976.1. NC_000914.2.
WP_010875274.1. NC_000914.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91773; AAB91773; NGR_a02490.
GeneIDi962622.
KEGGirhi:NGR_a02490.
PATRICi32301247. VBIRhiSp122450_0259.

Phylogenomic databases

HOGENOMiHOG000212232.
KOiK10440.
OMAiLMVALEY.
OrthoDBiPOG091H0H3J.

Family and domain databases

InterProiIPR001851. ABC_transp_permease.
[Graphical view]
PfamiPF02653. BPD_transp_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY4MJ_SINFN
AccessioniPrimary (citable) accession number: P55569
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 2, 2016
This is version 88 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.