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P55569 (Y4MJ_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 74. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable ABC transporter permease protein y4mJ
Gene names
Ordered Locus Names:NGR_a02490
ORF Names:y4mJ
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length333 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Probably part of the binding-protein-dependent transport system y4mIJK. This system probably transports a sugar. Probably responsible for the translocation of the substrate across the membrane.

Subcellular location

Cell inner membrane; Multi-pass membrane protein.

Sequence similarities

Belongs to the binding-protein-dependent transport system permease family. AraH/RbsC subfamily.

Ontologies

Keywords
   Biological processSugar transport
Transport
   Cellular componentCell inner membrane
Cell membrane
Membrane
   DomainTransmembrane
Transmembrane helix
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Biological_processcarbohydrate transport

Inferred from electronic annotation. Source: UniProtKB-KW

   Cellular_componentintegral component of membrane

Inferred from electronic annotation. Source: UniProtKB-KW

plasma membrane

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functiontransporter activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 333333Probable ABC transporter permease protein y4mJ
PRO_0000060294

Regions

Transmembrane30 – 5021Helical; Potential
Transmembrane62 – 8221Helical; Potential
Transmembrane84 – 10421Helical; Potential
Transmembrane110 – 13021Helical; Potential
Transmembrane133 – 15321Helical; Potential
Transmembrane175 – 19521Helical; Potential
Transmembrane228 – 24821Helical; Potential
Transmembrane253 – 27321Helical; Potential
Transmembrane274 – 29421Helical; Potential
Transmembrane300 – 32021Helical; Potential

Sequences

Sequence LengthMass (Da)Tools
P55569 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 88E7E95F48E638C7

FASTA33333,907
        10         20         30         40         50         60 
MTKTIIDQAG ATPGAIRTRE GLVSAYRTEL AIAGAIVLLV LAVGTQVPQA MSWGNFANIT 

        70         80         90        100        110        120 
QAGAPLIIMS LGVLLVVITG GIDLSVGSVF SLTGMVTAQA MASGLDVSAA LIGLGVGLVF 

       130        140        150        160        170        180 
GSINGFLVTV AGLAPFVVTL ITFAVAGSLA FIVTNGRSMP IGDPDFWLLN SGSLIPGVPN 

       190        200        210        220        230        240 
YILFCIVLLV VIEIFLKKMV AGRWFYAVGS SAAAARLLGI PVKRTQFFAY VASSLLASFS 

       250        260        270        280        290        300 
GLLTISYILN AESTAGSSLM LQAIAAVVIG GASLLGGTGT AVGAVLGALM ITVIQNGVNL 

       310        320        330 
IGINSFWQGS VTGLAILIAV LIDRFSKSRR GAV 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB91773.1.
RefSeqNP_443976.1. NC_000914.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a02490.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91773; AAB91773; NGR_a02490.
GeneID962622.
KEGGrhi:NGR_a02490.
PATRIC32301247. VBIRhiSp122450_0259.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1172.
HOGENOMHOG000212232.
KOK10440.
OMAQARTITN.
OrthoDBEOG61P6T8.

Enzyme and pathway databases

BioCycRETL1328306-WGS:GSTH-3242-MONOMER.
SFRE394:GBYN-6300-MONOMER.

Family and domain databases

InterProIPR001851. ABC_transp_permease.
[Graphical view]
PfamPF02653. BPD_transp_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY4MJ_RHISN
AccessionPrimary (citable) accession number: P55569
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: July 9, 2014
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names