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Protein

Probable ABC transporter periplasmic-binding protein y4mI

Gene

NGR_a02500

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Probably part of the binding-protein-dependent transport system y4mIJK. This system probably transports a sugar.

GO - Biological processi

  1. carbohydrate transport Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Sugar transport, Transport

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-4519-MONOMER.
SFRE394:GBYN-6301-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Probable ABC transporter periplasmic-binding protein y4mI
Gene namesi
Ordered Locus Names:NGR_a02500
ORF Names:y4mI
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054 Componenti: Plasmid sym pNGR234a

Subcellular locationi

  1. Periplasm Curated

GO - Cellular componenti

  1. periplasmic space Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Periplasm

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 1818Or 26Sequence AnalysisAdd
BLAST
Chaini19 – 324306Probable ABC transporter periplasmic-binding protein y4mIPRO_0000031746Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a02500.

Structurei

3D structure databases

ProteinModelPortaliP55568.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiCOG1879.
HOGENOMiHOG000274031.
KOiK10439.
OMAiDISYWQW.
OrthoDBiEOG61P6T8.

Family and domain databases

InterProiIPR028082. Peripla_BP_I.
IPR025997. SBP_2_dom.
[Graphical view]
PfamiPF13407. Peripla_BP_4. 1 hit.
[Graphical view]
SUPFAMiSSF53822. SSF53822. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P55568-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRKKLNGWLA MAAGAALAAL SSVSHAEDRK TVAYLAPSLD ISYWQWVGFG
60 70 80 90 100
VKQKAQELGM DYVEFTSENS PAKQMDNART AVTKGVDAIV IGPVSSTSTP
110 120 130 140 150
PLLAYLKSQN IPIAFAGIGP QPGQTDYTSS VTANNYETGK AQGSFVCALA
160 170 180 190 200
KERGGNKVGM LSLPQDRENA QKYLKGAQEA FAADGCELVQ MLETRGLTVN
210 220 230 240 250
EAVTQANDML TAHPDIKAIY GMYDEAGTGA AKVLETRGLT GKIGIAVADG
260 270 280 290 300
SPTTIALLKA TAIQGIFFQE AVGQGIDGTL QVFNALTNAP VEKDLALVMP
310 320
LVTADKIDTA EAKAVIARVF PPSN
Length:324
Mass (Da):34,088
Last modified:November 1, 1997 - v1
Checksum:i173BBE8D7ED0C6B0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91772.1.
RefSeqiNP_443975.1. NC_000914.2.
WP_010875275.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91772; AAB91772; NGR_a02500.
GeneIDi962570.
KEGGirhi:NGR_a02500.
PATRICi32301249. VBIRhiSp122450_0260.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91772.1.
RefSeqiNP_443975.1. NC_000914.2.
WP_010875275.1. NC_000914.2.

3D structure databases

ProteinModelPortaliP55568.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi394.NGR_a02500.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91772; AAB91772; NGR_a02500.
GeneIDi962570.
KEGGirhi:NGR_a02500.
PATRICi32301249. VBIRhiSp122450_0260.

Phylogenomic databases

eggNOGiCOG1879.
HOGENOMiHOG000274031.
KOiK10439.
OMAiDISYWQW.
OrthoDBiEOG61P6T8.

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-4519-MONOMER.
SFRE394:GBYN-6301-MONOMER.

Family and domain databases

InterProiIPR028082. Peripla_BP_I.
IPR025997. SBP_2_dom.
[Graphical view]
PfamiPF13407. Peripla_BP_4. 1 hit.
[Graphical view]
SUPFAMiSSF53822. SSF53822. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4MI_RHISN
AccessioniPrimary (citable) accession number: P55568
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: April 29, 2015
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.