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Protein

Uncharacterized protein y4mC

Gene

NGR_a02560

Organism
Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein y4mC
Gene namesi
Ordered Locus Names:NGR_a02560
ORF Names:y4mC
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiSinorhizobium fredii (strain NBRC 101917 / NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000001054 Componenti: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 28Sequence analysisAdd BLAST28
ChainiPRO_000001416929 – 237Uncharacterized protein y4mCAdd BLAST209

Structurei

3D structure databases

ProteinModelPortaliP55562.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

HOGENOMiHOG000288334.
OMAiCEVAETY.
OrthoDBiPOG091H29U3.

Family and domain databases

Gene3Di3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
[Graphical view]
SUPFAMiSSF64288. SSF64288. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P55562-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVFSFSTFNR LVTFTVMAAI VSVRPLTAED LSSQQQWPGT PLSRVEALAV
60 70 80 90 100
LQTLNANLLS NASATLTLDR WCEAHRLAPP GSKIVAKHVQ GHDKPANVHI
110 120 130 140 150
RKLLHVGPNE PIVYRHVRLA CGDRILSEAD NWYVPARLTA EMNEVLNTTD
160 170 180 190 200
ISFGRAVRSL NFTRTNLTAR LLWSPLPEGW DMSAELPVSS SGPLIPPPFL
210 220 230
LEHHAVLKLQ DGTPFSAVVE SYTNNVLDFP APLLYPQ
Length:237
Mass (Da):26,205
Last modified:November 1, 1997 - v1
Checksum:iF5AA67D9EB7BFB5B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91766.1.
RefSeqiNP_443969.1. NC_000914.2.
WP_010875281.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91766; AAB91766; NGR_a02560.
GeneIDi962364.
KEGGirhi:NGR_a02560.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91766.1.
RefSeqiNP_443969.1. NC_000914.2.
WP_010875281.1. NC_000914.2.

3D structure databases

ProteinModelPortaliP55562.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91766; AAB91766; NGR_a02560.
GeneIDi962364.
KEGGirhi:NGR_a02560.

Phylogenomic databases

HOGENOMiHOG000288334.
OMAiCEVAETY.
OrthoDBiPOG091H29U3.

Family and domain databases

Gene3Di3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
[Graphical view]
SUPFAMiSSF64288. SSF64288. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY4MC_SINFN
AccessioniPrimary (citable) accession number: P55562
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 2, 2016
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.