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Protein

Uncharacterized protein y4mC

Gene

NGR_a02560

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6307-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein y4mC
Gene namesi
Ordered Locus Names:NGR_a02560
ORF Names:y4mC
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054 Componenti: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2828Sequence AnalysisAdd
BLAST
Chaini29 – 237209Uncharacterized protein y4mCPRO_0000014169Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a02560.

Structurei

3D structure databases

ProteinModelPortaliP55562.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Keywords - Domaini

Signal

Phylogenomic databases

eggNOGiNOG46789.
HOGENOMiHOG000288334.
OMAiCEVAETY.
OrthoDBiEOG6TFCQG.

Family and domain databases

Gene3Di3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
[Graphical view]
SUPFAMiSSF64288. SSF64288. 1 hit.

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

P55562-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVFSFSTFNR LVTFTVMAAI VSVRPLTAED LSSQQQWPGT PLSRVEALAV
60 70 80 90 100
LQTLNANLLS NASATLTLDR WCEAHRLAPP GSKIVAKHVQ GHDKPANVHI
110 120 130 140 150
RKLLHVGPNE PIVYRHVRLA CGDRILSEAD NWYVPARLTA EMNEVLNTTD
160 170 180 190 200
ISFGRAVRSL NFTRTNLTAR LLWSPLPEGW DMSAELPVSS SGPLIPPPFL
210 220 230
LEHHAVLKLQ DGTPFSAVVE SYTNNVLDFP APLLYPQ
Length:237
Mass (Da):26,205
Last modified:November 1, 1997 - v1
Checksum:iF5AA67D9EB7BFB5B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91766.1.
RefSeqiNP_443969.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91766; AAB91766; NGR_a02560.
GeneIDi962364.
KEGGirhi:NGR_a02560.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91766.1.
RefSeqiNP_443969.1. NC_000914.2.

3D structure databases

ProteinModelPortaliP55562.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi394.NGR_a02560.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91766; AAB91766; NGR_a02560.
GeneIDi962364.
KEGGirhi:NGR_a02560.

Phylogenomic databases

eggNOGiNOG46789.
HOGENOMiHOG000288334.
OMAiCEVAETY.
OrthoDBiEOG6TFCQG.

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6307-MONOMER.

Family and domain databases

Gene3Di3.40.1410.10. 1 hit.
InterProiIPR028978. Chorismate_lyase_/UTRA_dom.
[Graphical view]
SUPFAMiSSF64288. SSF64288. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4MC_RHISN
AccessioniPrimary (citable) accession number: P55562
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: April 29, 2015
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.