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P55503 (Y4JC_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 47. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized protein y4jC
Gene names
Ordered Locus Names:NGR_a03130
ORF Names:y4jC
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length117 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the transposase 34 family.

Ontologies

Keywords
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 117117Uncharacterized protein y4jC
PRO_0000200869

Sequences

Sequence LengthMass (Da)Tools
P55503 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: FF3C4E1F2AAACC22

FASTA11713,083
        10         20         30         40         50         60 
MIGPSRGLRI MVATQPVDFR RGMNGLVALV GSALLADPYC GDIFVFRAKR CDRLRCIYWD 

        70         80         90        100        110 
GSGMILSTKW LESGKFIFPP VKDGALHMSP EEFSLLVAGL DWTRVKRKPV KRPTKVA 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB91715.1.
RefSeqNP_443913.1. NC_000914.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a03130.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91715; AAB91715; NGR_a03130.
GeneID962587.
KEGGrhi:NGR_a03130.
PATRIC32301373. VBIRhiSp122450_0321.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG3436.
HOGENOMHOG000222383.
KOK07484.
OMAMILVTKW.
OrthoDBEOG6SFPHH.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6364-MONOMER.

Family and domain databases

InterProIPR008878. Transposase_IS66_Orf2.
[Graphical view]
PfamPF05717. TnpB_IS66. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY4JC_RHISN
AccessionPrimary (citable) accession number: P55503
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: May 14, 2014
This is version 47 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names