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Protein

Uncharacterized protein y4jC

Gene

NGR_a03130

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6364-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein y4jC
Gene namesi
Ordered Locus Names:NGR_a03130
ORF Names:y4jC
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054 Componenti: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 117117Uncharacterized protein y4jCPRO_0000200869Add
BLAST

Family & Domainsi

Sequence similaritiesi

Belongs to the transposase 34 family.Curated

Phylogenomic databases

eggNOGiCOG3436.
HOGENOMiHOG000222383.
KOiK07484.
OMAiVKRPTKV.
OrthoDBiEOG6SFPHH.

Family and domain databases

InterProiIPR008878. Transposase_IS66_Orf2.
[Graphical view]
PfamiPF05717. TnpB_IS66. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55503-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIGPSRGLRI MVATQPVDFR RGMNGLVALV GSALLADPYC GDIFVFRAKR
60 70 80 90 100
CDRLRCIYWD GSGMILSTKW LESGKFIFPP VKDGALHMSP EEFSLLVAGL
110
DWTRVKRKPV KRPTKVA
Length:117
Mass (Da):13,083
Last modified:November 1, 1997 - v1
Checksum:iFF3C4E1F2AAACC22
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91715.1.
RefSeqiNP_443913.1. NC_000914.2.
WP_010875333.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91715; AAB91715; NGR_a03130.
GeneIDi962587.
KEGGirhi:NGR_a03130.
PATRICi32301373. VBIRhiSp122450_0321.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91715.1.
RefSeqiNP_443913.1. NC_000914.2.
WP_010875333.1. NC_000914.2.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91715; AAB91715; NGR_a03130.
GeneIDi962587.
KEGGirhi:NGR_a03130.
PATRICi32301373. VBIRhiSp122450_0321.

Phylogenomic databases

eggNOGiCOG3436.
HOGENOMiHOG000222383.
KOiK07484.
OMAiVKRPTKV.
OrthoDBiEOG6SFPHH.

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6364-MONOMER.

Family and domain databases

InterProiIPR008878. Transposase_IS66_Orf2.
[Graphical view]
PfamiPF05717. TnpB_IS66. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4JC_RHISN
AccessioniPrimary (citable) accession number: P55503
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: July 22, 2015
This is version 54 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.