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Protein

Uncharacterized protein y4iM

Gene

NGR_a03200

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei236 – 2361Heme (covalent)PROSITE-ProRule annotation
Binding sitei239 – 2391Heme (covalent)PROSITE-ProRule annotation
Metal bindingi240 – 2401Iron (heme axial ligand)PROSITE-ProRule annotation

GO - Molecular functioni

  1. electron carrier activity Source: InterPro
  2. heme binding Source: InterPro
  3. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. oxidation-reduction process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

Heme, Iron, Metal-binding

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6371-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein y4iM
Gene namesi
Ordered Locus Names:NGR_a03200
ORF Names:y4iM
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 432432Uncharacterized protein y4iMPRO_0000108452Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a03200.

Structurei

3D structure databases

ProteinModelPortaliP55496.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini223 – 432210Cytochrome cPROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 cytochrome c domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiNOG82117.
OrthoDBiEOG6MWN82.

Family and domain databases

Gene3Di1.10.760.10. 2 hits.
InterProiIPR009056. Cyt_c-like_dom.
[Graphical view]
SUPFAMiSSF46626. SSF46626. 3 hits.
PROSITEiPS51007. CYTC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55496-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTAYFSTPEK IQASAERIAA IIDAKPNGYF YPPAYFGKPG FLNFTPNVEV
60 70 80 90 100
AQRAALKKNL PGILATFACG TVQREAGIEL QKQTSYGNWN GPGFSGFSTG
110 120 130 140 150
QQDGSGDLIF QLLVAKAMPP GECQPNAAGG LNRNFDATAF KNSSHPEIPP
160 170 180 190 200
FATITDIPSV WNQQERSLAQ WDGSVKMAFW RNIAAQLPIV GDPSKIDLVN
210 220 230 240 250
TGVVANFLDG LPPAAYPFDV DMASAVRGEA LFKDNCAVCH KPHNDTIYQF
260 270 280 290 300
RDIGTDMNRA AVLNDAAFHL FAAGFQASCH DQDFLYRSPT GEEVRPCRMA
310 320 330 340 350
GEDVITARTT PAVQGYVAEV LDGVWARAPY LHNGSIPTLY HLLVPASRPE
360 370 380 390 400
QFLRGAIQYD TAKVGYVLDP AVTGLVADTS PTLTIYDRRK DGHAGTGHDR
410 420 430
NLVVDGKLRR LDWSGPQYAD ALKDLIEYLK TR
Length:432
Mass (Da):47,090
Last modified:November 1, 1997 - v1
Checksum:i106F170F883A50DC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91708.1.
RefSeqiNP_443906.1. NC_000914.2.
WP_010875336.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91708; AAB91708; NGR_a03200.
GeneIDi962615.
KEGGirhi:NGR_a03200.
PATRICi32301391. VBIRhiSp122450_0330.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91708.1.
RefSeqiNP_443906.1. NC_000914.2.
WP_010875336.1. NC_000914.2.

3D structure databases

ProteinModelPortaliP55496.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi394.NGR_a03200.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91708; AAB91708; NGR_a03200.
GeneIDi962615.
KEGGirhi:NGR_a03200.
PATRICi32301391. VBIRhiSp122450_0330.

Phylogenomic databases

eggNOGiNOG82117.
OrthoDBiEOG6MWN82.

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6371-MONOMER.

Family and domain databases

Gene3Di1.10.760.10. 2 hits.
InterProiIPR009056. Cyt_c-like_dom.
[Graphical view]
SUPFAMiSSF46626. SSF46626. 3 hits.
PROSITEiPS51007. CYTC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4IM_RHISN
AccessioniPrimary (citable) accession number: P55496
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: March 4, 2015
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.