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P55496

- Y4IM_RHISN

UniProt

P55496 - Y4IM_RHISN

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Protein
Uncharacterized protein y4iM
Gene
NGR_a03200, y4iM
Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5 - Protein predictedi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei236 – 2361Heme (covalent) Reviewed prediction
Binding sitei239 – 2391Heme (covalent) Reviewed prediction
Metal bindingi240 – 2401Iron (heme axial ligand) Reviewed prediction

GO - Molecular functioni

  1. electron carrier activity Source: InterPro
  2. heme binding Source: InterPro
  3. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. oxidation-reduction process Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

Heme, Iron, Metal-binding

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6371-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein y4iM
Gene namesi
Ordered Locus Names:NGR_a03200
ORF Names:y4iM
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 432432Uncharacterized protein y4iM
PRO_0000108452Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a03200.

Structurei

3D structure databases

ProteinModelPortaliP55496.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini223 – 432210Cytochrome c
Add
BLAST

Sequence similaritiesi

Phylogenomic databases

eggNOGiNOG82117.
OrthoDBiEOG6MWN82.

Family and domain databases

Gene3Di1.10.760.10. 2 hits.
InterProiIPR009056. Cyt_c-like_dom.
[Graphical view]
SUPFAMiSSF46626. SSF46626. 3 hits.
PROSITEiPS51007. CYTC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55496-1 [UniParc]FASTAAdd to Basket

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MTAYFSTPEK IQASAERIAA IIDAKPNGYF YPPAYFGKPG FLNFTPNVEV    50
AQRAALKKNL PGILATFACG TVQREAGIEL QKQTSYGNWN GPGFSGFSTG 100
QQDGSGDLIF QLLVAKAMPP GECQPNAAGG LNRNFDATAF KNSSHPEIPP 150
FATITDIPSV WNQQERSLAQ WDGSVKMAFW RNIAAQLPIV GDPSKIDLVN 200
TGVVANFLDG LPPAAYPFDV DMASAVRGEA LFKDNCAVCH KPHNDTIYQF 250
RDIGTDMNRA AVLNDAAFHL FAAGFQASCH DQDFLYRSPT GEEVRPCRMA 300
GEDVITARTT PAVQGYVAEV LDGVWARAPY LHNGSIPTLY HLLVPASRPE 350
QFLRGAIQYD TAKVGYVLDP AVTGLVADTS PTLTIYDRRK DGHAGTGHDR 400
NLVVDGKLRR LDWSGPQYAD ALKDLIEYLK TR 432
Length:432
Mass (Da):47,090
Last modified:November 1, 1997 - v1
Checksum:i106F170F883A50DC
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB91708.1.
RefSeqiNP_443906.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91708; AAB91708; NGR_a03200.
GeneIDi962615.
KEGGirhi:NGR_a03200.
PATRICi32301391. VBIRhiSp122450_0330.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB91708.1 .
RefSeqi NP_443906.1. NC_000914.2.

3D structure databases

ProteinModelPortali P55496.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_a03200.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB91708 ; AAB91708 ; NGR_a03200 .
GeneIDi 962615.
KEGGi rhi:NGR_a03200.
PATRICi 32301391. VBIRhiSp122450_0330.

Phylogenomic databases

eggNOGi NOG82117.
OrthoDBi EOG6MWN82.

Enzyme and pathway databases

BioCyci SFRE394:GBYN-6371-MONOMER.

Family and domain databases

Gene3Di 1.10.760.10. 2 hits.
InterProi IPR009056. Cyt_c-like_dom.
[Graphical view ]
SUPFAMi SSF46626. SSF46626. 3 hits.
PROSITEi PS51007. CYTC. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4IM_RHISN
AccessioniPrimary (citable) accession number: P55496
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: April 16, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3