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Protein

Uncharacterized protein y4iM

Gene

NGR_a03200

Organism
Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei236Heme (covalent)PROSITE-ProRule annotation1
Binding sitei239Heme (covalent)PROSITE-ProRule annotation1
Metal bindingi240Iron (heme axial ligand)PROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Electron transport, Transport

Keywords - Ligandi

Heme, Iron, Metal-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein y4iM
Gene namesi
Ordered Locus Names:NGR_a03200
ORF Names:y4iM
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiSinorhizobium fredii (strain NBRC 101917 / NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000001054 Componenti: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001084521 – 432Uncharacterized protein y4iMAdd BLAST432

Structurei

3D structure databases

ProteinModelPortaliP55496.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini223 – 432Cytochrome cPROSITE-ProRule annotationAdd BLAST210

Sequence similaritiesi

Contains 1 cytochrome c domain.PROSITE-ProRule annotation

Phylogenomic databases

OrthoDBiPOG091H14SF.

Family and domain databases

Gene3Di1.10.760.10. 2 hits.
InterProiIPR009056. Cyt_c-like_dom.
[Graphical view]
SUPFAMiSSF46626. SSF46626. 3 hits.
PROSITEiPS51007. CYTC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55496-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTAYFSTPEK IQASAERIAA IIDAKPNGYF YPPAYFGKPG FLNFTPNVEV
60 70 80 90 100
AQRAALKKNL PGILATFACG TVQREAGIEL QKQTSYGNWN GPGFSGFSTG
110 120 130 140 150
QQDGSGDLIF QLLVAKAMPP GECQPNAAGG LNRNFDATAF KNSSHPEIPP
160 170 180 190 200
FATITDIPSV WNQQERSLAQ WDGSVKMAFW RNIAAQLPIV GDPSKIDLVN
210 220 230 240 250
TGVVANFLDG LPPAAYPFDV DMASAVRGEA LFKDNCAVCH KPHNDTIYQF
260 270 280 290 300
RDIGTDMNRA AVLNDAAFHL FAAGFQASCH DQDFLYRSPT GEEVRPCRMA
310 320 330 340 350
GEDVITARTT PAVQGYVAEV LDGVWARAPY LHNGSIPTLY HLLVPASRPE
360 370 380 390 400
QFLRGAIQYD TAKVGYVLDP AVTGLVADTS PTLTIYDRRK DGHAGTGHDR
410 420 430
NLVVDGKLRR LDWSGPQYAD ALKDLIEYLK TR
Length:432
Mass (Da):47,090
Last modified:November 1, 1997 - v1
Checksum:i106F170F883A50DC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91708.1.
RefSeqiNP_443906.1. NC_000914.2.
WP_010875336.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91708; AAB91708; NGR_a03200.
GeneIDi962615.
KEGGirhi:NGR_a03200.
PATRICi32301391. VBIRhiSp122450_0330.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91708.1.
RefSeqiNP_443906.1. NC_000914.2.
WP_010875336.1. NC_000914.2.

3D structure databases

ProteinModelPortaliP55496.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91708; AAB91708; NGR_a03200.
GeneIDi962615.
KEGGirhi:NGR_a03200.
PATRICi32301391. VBIRhiSp122450_0330.

Phylogenomic databases

OrthoDBiPOG091H14SF.

Family and domain databases

Gene3Di1.10.760.10. 2 hits.
InterProiIPR009056. Cyt_c-like_dom.
[Graphical view]
SUPFAMiSSF46626. SSF46626. 3 hits.
PROSITEiPS51007. CYTC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY4IM_SINFN
AccessioniPrimary (citable) accession number: P55496
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 2, 2016
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.