P55496 (Y4IM_RHISN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Uncharacterized protein y4iM

Gene names

Ordered Locus Names:	NGR_a03200
ORF Names:	y4iM

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium › Sinorhizobium fredii group › Rhizobium fredii

Protein attributes

Sequence length	432 AA.
Sequence status	Complete.
Protein existence	Predicted

General annotation (Comments)

Sequence similarities

Contains 1 cytochrome c domain.

Ontologies

Keywords
Biological process	Electron transport Transport
Ligand	Heme Iron Metal-binding
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
Biological_process	electron transport chain Inferred from electronic annotation. Source: UniProtKB-KW
Molecular_function	electron carrier activity Inferred from electronic annotation. Source: InterPro heme binding Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 432	432	Uncharacterized protein y4iM		PRO_0000108452
Regions
	Domain	223 – 432	210	Cytochrome c
Sites
	Metal binding	240	1	Iron (heme axial ligand) Potential
	Binding site	236	1	Heme (covalent) Potential
	Binding site	239	1	Heme (covalent) Potential

Sequences

	Sequence		Length	Mass (Da)
	P55496 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 106F170F883A50DC	FASTA	432	47,090
	10 20 30 40 50 60 MTAYFSTPEK IQASAERIAA IIDAKPNGYF YPPAYFGKPG FLNFTPNVEV AQRAALKKNL 70 80 90 100 110 120 PGILATFACG TVQREAGIEL QKQTSYGNWN GPGFSGFSTG QQDGSGDLIF QLLVAKAMPP 130 140 150 160 170 180 GECQPNAAGG LNRNFDATAF KNSSHPEIPP FATITDIPSV WNQQERSLAQ WDGSVKMAFW 190 200 210 220 230 240 RNIAAQLPIV GDPSKIDLVN TGVVANFLDG LPPAAYPFDV DMASAVRGEA LFKDNCAVCH 250 260 270 280 290 300 KPHNDTIYQF RDIGTDMNRA AVLNDAAFHL FAAGFQASCH DQDFLYRSPT GEEVRPCRMA 310 320 330 340 350 360 GEDVITARTT PAVQGYVAEV LDGVWARAPY LHNGSIPTLY HLLVPASRPE QFLRGAIQYD 370 380 390 400 410 420 TAKVGYVLDP AVTGLVADTS PTLTIYDRRK DGHAGTGHDR NLVVDGKLRR LDWSGPQYAD 430 ALKDLIEYLK TR

References

[1]

"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

[2]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U00090 Genomic DNA. Translation: AAB91708.1.
RefSeq	NP_443906.1. NC_000914.2.
3D structure databases
ProteinModelPortal	P55496.
ModBase	Search...
Protein-protein interaction databases
STRING	394.NGR_a03200.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAB91708; AAB91708; NGR_a03200.
GeneID	962615.
KEGG	rhi:NGR_a03200.
PATRIC	32301391. VBIRhiSp122450_0330.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	NOG82117.
Family and domain databases
InterPro	IPR009056. Cyt_c_dom. [Graphical view]
SUPFAM	SSF46626. Cytochrome_c. 1 hit.
PROSITE	PS51007. CYTC. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y4IM_RHISN

Accession

Primary (citable) accession number: P55496

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	May 1, 2013
This is version 59 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program