Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

P55496 (Y4IM_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified April 16, 2014. Version 64. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized protein y4iM
Gene names
Ordered Locus Names:NGR_a03200
ORF Names:y4iM
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length432 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Sequence similarities

Contains 1 cytochrome c domain.

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 432432Uncharacterized protein y4iM
PRO_0000108452

Regions

Domain223 – 432210Cytochrome c

Sites

Metal binding2401Iron (heme axial ligand) Potential
Binding site2361Heme (covalent) Potential
Binding site2391Heme (covalent) Potential

Sequences

Sequence LengthMass (Da)Tools
P55496 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 106F170F883A50DC

FASTA43247,090
        10         20         30         40         50         60 
MTAYFSTPEK IQASAERIAA IIDAKPNGYF YPPAYFGKPG FLNFTPNVEV AQRAALKKNL 

        70         80         90        100        110        120 
PGILATFACG TVQREAGIEL QKQTSYGNWN GPGFSGFSTG QQDGSGDLIF QLLVAKAMPP 

       130        140        150        160        170        180 
GECQPNAAGG LNRNFDATAF KNSSHPEIPP FATITDIPSV WNQQERSLAQ WDGSVKMAFW 

       190        200        210        220        230        240 
RNIAAQLPIV GDPSKIDLVN TGVVANFLDG LPPAAYPFDV DMASAVRGEA LFKDNCAVCH 

       250        260        270        280        290        300 
KPHNDTIYQF RDIGTDMNRA AVLNDAAFHL FAAGFQASCH DQDFLYRSPT GEEVRPCRMA 

       310        320        330        340        350        360 
GEDVITARTT PAVQGYVAEV LDGVWARAPY LHNGSIPTLY HLLVPASRPE QFLRGAIQYD 

       370        380        390        400        410        420 
TAKVGYVLDP AVTGLVADTS PTLTIYDRRK DGHAGTGHDR NLVVDGKLRR LDWSGPQYAD 

       430 
ALKDLIEYLK TR 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB91708.1.
RefSeqNP_443906.1. NC_000914.2.

3D structure databases

ProteinModelPortalP55496.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a03200.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91708; AAB91708; NGR_a03200.
GeneID962615.
KEGGrhi:NGR_a03200.
PATRIC32301391. VBIRhiSp122450_0330.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG82117.
OrthoDBEOG6MWN82.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6371-MONOMER.

Family and domain databases

Gene3D1.10.760.10. 2 hits.
InterProIPR009056. Cyt_c-like_dom.
[Graphical view]
SUPFAMSSF46626. SSF46626. 3 hits.
PROSITEPS51007. CYTC. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY4IM_RHISN
AccessionPrimary (citable) accession number: P55496
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: April 16, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names