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P55496

- Y4IM_RHISN

UniProt

P55496 - Y4IM_RHISN

Protein

Uncharacterized protein y4iM

Gene

NGR_a03200

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 65 (01 Oct 2014)
      Sequence version 1 (01 Nov 1997)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Binding sitei236 – 2361Heme (covalent)PROSITE-ProRule annotation
    Binding sitei239 – 2391Heme (covalent)PROSITE-ProRule annotation
    Metal bindingi240 – 2401Iron (heme axial ligand)PROSITE-ProRule annotation

    GO - Molecular functioni

    1. electron carrier activity Source: InterPro
    2. heme binding Source: InterPro
    3. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. oxidation-reduction process Source: UniProtKB-KW

    Keywords - Biological processi

    Electron transport, Transport

    Keywords - Ligandi

    Heme, Iron, Metal-binding

    Enzyme and pathway databases

    BioCyciSFRE394:GBYN-6371-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Uncharacterized protein y4iM
    Gene namesi
    Ordered Locus Names:NGR_a03200
    ORF Names:y4iM
    Encoded oniPlasmid sym pNGR234a0 Publication
    OrganismiRhizobium sp. (strain NGR234)
    Taxonomic identifieri394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001054: Plasmid sym pNGR234a

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 432432Uncharacterized protein y4iMPRO_0000108452Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi394.NGR_a03200.

    Structurei

    3D structure databases

    ProteinModelPortaliP55496.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini223 – 432210Cytochrome cPROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 cytochrome c domain.PROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiNOG82117.
    OrthoDBiEOG6MWN82.

    Family and domain databases

    Gene3Di1.10.760.10. 2 hits.
    InterProiIPR009056. Cyt_c-like_dom.
    [Graphical view]
    SUPFAMiSSF46626. SSF46626. 3 hits.
    PROSITEiPS51007. CYTC. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P55496-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTAYFSTPEK IQASAERIAA IIDAKPNGYF YPPAYFGKPG FLNFTPNVEV    50
    AQRAALKKNL PGILATFACG TVQREAGIEL QKQTSYGNWN GPGFSGFSTG 100
    QQDGSGDLIF QLLVAKAMPP GECQPNAAGG LNRNFDATAF KNSSHPEIPP 150
    FATITDIPSV WNQQERSLAQ WDGSVKMAFW RNIAAQLPIV GDPSKIDLVN 200
    TGVVANFLDG LPPAAYPFDV DMASAVRGEA LFKDNCAVCH KPHNDTIYQF 250
    RDIGTDMNRA AVLNDAAFHL FAAGFQASCH DQDFLYRSPT GEEVRPCRMA 300
    GEDVITARTT PAVQGYVAEV LDGVWARAPY LHNGSIPTLY HLLVPASRPE 350
    QFLRGAIQYD TAKVGYVLDP AVTGLVADTS PTLTIYDRRK DGHAGTGHDR 400
    NLVVDGKLRR LDWSGPQYAD ALKDLIEYLK TR 432
    Length:432
    Mass (Da):47,090
    Last modified:November 1, 1997 - v1
    Checksum:i106F170F883A50DC
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91708.1.
    RefSeqiNP_443906.1. NC_000914.2.

    Genome annotation databases

    EnsemblBacteriaiAAB91708; AAB91708; NGR_a03200.
    GeneIDi962615.
    KEGGirhi:NGR_a03200.
    PATRICi32301391. VBIRhiSp122450_0330.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91708.1 .
    RefSeqi NP_443906.1. NC_000914.2.

    3D structure databases

    ProteinModelPortali P55496.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 394.NGR_a03200.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB91708 ; AAB91708 ; NGR_a03200 .
    GeneIDi 962615.
    KEGGi rhi:NGR_a03200.
    PATRICi 32301391. VBIRhiSp122450_0330.

    Phylogenomic databases

    eggNOGi NOG82117.
    OrthoDBi EOG6MWN82.

    Enzyme and pathway databases

    BioCyci SFRE394:GBYN-6371-MONOMER.

    Family and domain databases

    Gene3Di 1.10.760.10. 2 hits.
    InterProi IPR009056. Cyt_c-like_dom.
    [Graphical view ]
    SUPFAMi SSF46626. SSF46626. 3 hits.
    PROSITEi PS51007. CYTC. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Molecular basis of symbiosis between Rhizobium and legumes."
      Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
      Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.

    Entry informationi

    Entry nameiY4IM_RHISN
    AccessioniPrimary (citable) accession number: P55496
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 65 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Plasmid, Reference proteome

    Documents

    1. Rhizobium plasmid pNGR234a
      Rhizobium plasmid pNGR234a: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3