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Protein

Uncharacterized protein y4iC

Gene

NGR_a03300

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6381-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein y4iC
Gene namesi
Ordered Locus Names:NGR_a03300
ORF Names:y4iC
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054 Componenti: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 230230Uncharacterized protein y4iCPRO_0000200857Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a03300.

Structurei

3D structure databases

ProteinModelPortaliP55486.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1959.
OrthoDBiEOG6ZH2HM.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000944. Tscrpt_reg_Rrf2-type.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF02082. Rrf2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55486-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MYRERAFNAP ARASGVDLLD AAAYGQQSNG DRRGEPRFGG DIERLIGTQT
60 70 80 90 100
GKVRLLPGTT FVTEIAMRNK IPKKFLDTIL LELRNVLCVR RRVHMAGIRL
110 120 130 140 150
SKPASEIMIG QVIRALDGPL APIHCASRSA FACDDCNDPV YRQSVLVICH
160 170 180 190 200
RGKKLGYGVA AWLRNASRVE LSDVSRRIIA QHQLRISQRP RAHQYCPASR
210 220 230
RNHRNEIEMG GPLRFGIIVR LDRHTQSLVN
Length:230
Mass (Da):25,828
Last modified:November 1, 1997 - v1
Checksum:i1D1245B74538D73A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91698.1.
RefSeqiNP_443896.1. NC_000914.2.
WP_010875344.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91698; AAB91698; NGR_a03300.
GeneIDi962599.
KEGGirhi:NGR_a03300.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91698.1.
RefSeqiNP_443896.1. NC_000914.2.
WP_010875344.1. NC_000914.2.

3D structure databases

ProteinModelPortaliP55486.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi394.NGR_a03300.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91698; AAB91698; NGR_a03300.
GeneIDi962599.
KEGGirhi:NGR_a03300.

Phylogenomic databases

eggNOGiCOG1959.
OrthoDBiEOG6ZH2HM.

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6381-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000944. Tscrpt_reg_Rrf2-type.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF02082. Rrf2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4IC_RHISN
AccessioniPrimary (citable) accession number: P55486
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: April 1, 2015
This is version 59 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.