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P55475

- NODJ_RHISN

UniProt

P55475 - NODJ_RHISN

Protein

Nodulation protein J

Gene

nodJ

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 84 (01 Oct 2014)
      Sequence version 1 (01 Nov 1997)
      Previous versions | rss
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    Functioni

    Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit encodes the transporter By similarity.By similarity

    GO - Molecular functioni

    1. ATPase activity, coupled to transmembrane movement of substances Source: InterPro
    2. ATP binding Source: InterPro

    GO - Biological processi

    1. nodulation Source: UniProtKB-KW
    2. oligosaccharide transport Source: InterPro

    Keywords - Biological processi

    Nodulation, Transport

    Enzyme and pathway databases

    BioCyciSFRE394:GBYN-6396-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Nodulation protein J
    Gene namesi
    Name:nodJ
    Ordered Locus Names:NGR_a03450
    ORF Names:y4hE
    Encoded oniPlasmid sym pNGR234a0 Publication
    OrganismiRhizobium sp. (strain NGR234)
    Taxonomic identifieri394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001054: Plasmid sym pNGR234a

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of membrane Source: UniProtKB-KW
    2. plasma membrane Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cell inner membrane, Cell membrane, Membrane

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 262262Nodulation protein JPRO_0000182991Add
    BLAST

    Interactioni

    Subunit structurei

    The complex is composed of two ATP-binding proteins (NodI) and two transmembrane proteins (NodJ).Curated

    Protein-protein interaction databases

    STRINGi394.NGR_a03450.

    Structurei

    Transmembrane

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Transmembranei35 – 5521HelicalSequence AnalysisAdd
    BLAST
    Transmembranei62 – 8221HelicalSequence AnalysisAdd
    BLAST
    Transmembranei125 – 14521HelicalSequence AnalysisAdd
    BLAST
    Transmembranei147 – 16721HelicalSequence AnalysisAdd
    BLAST
    Transmembranei177 – 19721HelicalSequence AnalysisAdd
    BLAST
    Transmembranei236 – 25621HelicalSequence AnalysisAdd
    BLAST

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini33 – 259227ABC transmembrane type-2PROSITE-ProRule annotationAdd
    BLAST

    Sequence similaritiesi

    Contains 1 ABC transmembrane type-2 domain.PROSITE-ProRule annotation

    Keywords - Domaini

    Transmembrane, Transmembrane helix

    Phylogenomic databases

    eggNOGiCOG0842.
    HOGENOMiHOG000225586.
    KOiK09694.
    OMAiLPANAWN.
    OrthoDBiEOG6B627P.

    Family and domain databases

    InterProiIPR013525. ABC_2_trans.
    IPR000412. ABC_2_transport.
    IPR005981. ABC_transptNodJ.
    [Graphical view]
    PfamiPF01061. ABC2_membrane. 1 hit.
    [Graphical view]
    PIRSFiPIRSF006648. DrrB. 1 hit.
    PRINTSiPR00164. ABC2TRNSPORT.
    TIGRFAMsiTIGR01291. nodJ. 1 hit.
    PROSITEiPS51012. ABC_TM2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    P55475-1 [UniParc]FASTAAdd to Basket

    « Hide

    MWKRYAAVLP ANPWNWIAVW RRNYMAWKKA AIASILGNLA EPVTSLFGLG    50
    FGLGAMVGRV DGIPYVAFLA AGMVATSAMI SATFETIHAT FARMQAKRTW 100
    ESALCTQLTL GDIVLGELAW AASKALLAGT AMMLVAATMG FASWPSVLFA 150
    LPVIALTGFA FASLAMIVTA LAPGYDYFIF YQTLFLTPML FLSGAVFPVS 200
    QLPDIFQKLS HLLPLAHSIE LIRPAMLDRP GGGVALHISA LCIFAVMPFF 250
    LSVGLLQRRL LS 262
    Length:262
    Mass (Da):28,294
    Last modified:November 1, 1997 - v1
    Checksum:iEC1DF7B2FE7852F0
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91693.1.
    RefSeqiNP_443881.1. NC_000914.2.
    WP_010875359.1. NC_000914.2.

    Genome annotation databases

    EnsemblBacteriaiAAB91693; AAB91693; NGR_a03450.
    GeneIDi962495.
    KEGGirhi:NGR_a03450.
    PATRICi32301437. VBIRhiSp122450_0354.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91693.1 .
    RefSeqi NP_443881.1. NC_000914.2.
    WP_010875359.1. NC_000914.2.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 394.NGR_a03450.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB91693 ; AAB91693 ; NGR_a03450 .
    GeneIDi 962495.
    KEGGi rhi:NGR_a03450.
    PATRICi 32301437. VBIRhiSp122450_0354.

    Phylogenomic databases

    eggNOGi COG0842.
    HOGENOMi HOG000225586.
    KOi K09694.
    OMAi LPANAWN.
    OrthoDBi EOG6B627P.

    Enzyme and pathway databases

    BioCyci SFRE394:GBYN-6396-MONOMER.

    Family and domain databases

    InterProi IPR013525. ABC_2_trans.
    IPR000412. ABC_2_transport.
    IPR005981. ABC_transptNodJ.
    [Graphical view ]
    Pfami PF01061. ABC2_membrane. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF006648. DrrB. 1 hit.
    PRINTSi PR00164. ABC2TRNSPORT.
    TIGRFAMsi TIGR01291. nodJ. 1 hit.
    PROSITEi PS51012. ABC_TM2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Molecular basis of symbiosis between Rhizobium and legumes."
      Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
      Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.

    Entry informationi

    Entry nameiNODJ_RHISN
    AccessioniPrimary (citable) accession number: P55475
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 84 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Plasmid, Reference proteome

    Documents

    1. Rhizobium plasmid pNGR234a
      Rhizobium plasmid pNGR234a: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3