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P55475 (NODJ_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified May 14, 2014. Version 82. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Nodulation protein J
Gene names
Name:nodJ
Ordered Locus Names:NGR_a03450
ORF Names:y4hE
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length262 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Part of the ABC transporter complex NodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modified beta-1,4-linked N-acetylglucosamine oligosaccharide. This subunit encodes the transporter By similarity.

Subunit structure

The complex is composed of two ATP-binding proteins (NodI) and two transmembrane proteins (NodJ) Probable.

Subcellular location

Cell inner membrane; Multi-pass membrane protein Potential.

Sequence similarities

Belongs to the ABC-2 integral membrane protein family. Lipooligosaccharide exporter (TC 3.A.1.102) subfamily. [View classification]

Contains 1 ABC transmembrane type-2 domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 262262Nodulation protein J
PRO_0000182991

Regions

Transmembrane35 – 5521Helical; Potential
Transmembrane62 – 8221Helical; Potential
Transmembrane125 – 14521Helical; Potential
Transmembrane147 – 16721Helical; Potential
Transmembrane177 – 19721Helical; Potential
Transmembrane236 – 25621Helical; Potential
Domain33 – 259227ABC transmembrane type-2

Sequences

Sequence LengthMass (Da)Tools
P55475 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: EC1DF7B2FE7852F0

FASTA26228,294
        10         20         30         40         50         60 
MWKRYAAVLP ANPWNWIAVW RRNYMAWKKA AIASILGNLA EPVTSLFGLG FGLGAMVGRV 

        70         80         90        100        110        120 
DGIPYVAFLA AGMVATSAMI SATFETIHAT FARMQAKRTW ESALCTQLTL GDIVLGELAW 

       130        140        150        160        170        180 
AASKALLAGT AMMLVAATMG FASWPSVLFA LPVIALTGFA FASLAMIVTA LAPGYDYFIF 

       190        200        210        220        230        240 
YQTLFLTPML FLSGAVFPVS QLPDIFQKLS HLLPLAHSIE LIRPAMLDRP GGGVALHISA 

       250        260 
LCIFAVMPFF LSVGLLQRRL LS 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB91693.1.
RefSeqNP_443881.1. NC_000914.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a03450.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91693; AAB91693; NGR_a03450.
GeneID962495.
KEGGrhi:NGR_a03450.
PATRIC32301437. VBIRhiSp122450_0354.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0842.
HOGENOMHOG000225586.
KOK09694.
OMALPANAWN.
OrthoDBEOG6B627P.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6396-MONOMER.

Family and domain databases

InterProIPR013525. ABC_2_trans.
IPR000412. ABC_2_transport.
IPR005981. ABC_transptNodJ.
[Graphical view]
PfamPF01061. ABC2_membrane. 1 hit.
[Graphical view]
PIRSFPIRSF006648. DrrB. 1 hit.
PRINTSPR00164. ABC2TRNSPORT.
TIGRFAMsTIGR01291. nodJ. 1 hit.
PROSITEPS51012. ABC_TM2. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameNODJ_RHISN
AccessionPrimary (citable) accession number: P55475
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: May 14, 2014
This is version 82 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names