Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

P55459

- Y4GC_RHISN

UniProt

P55459 - Y4GC_RHISN

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein

Putative integrase/recombinase y4gC

Gene

NGR_a03610

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei170 – 1701O-(3'-phospho-DNA)-tyrosine intermediateBy similarity

GO - Molecular functioni

  1. DNA binding Source: InterPro

GO - Biological processi

  1. DNA integration Source: UniProtKB-KW
  2. DNA recombination Source: UniProtKB-KW
  3. establishment of integrated proviral latency Source: UniProtKB-KW
  4. viral entry into host cell Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

DNA integration, DNA recombination, Viral genome integration, Virus entry into host cell

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6412-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative integrase/recombinase y4gC
Gene namesi
Ordered Locus Names:NGR_a03610
ORF Names:y4gC
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 192192Putative integrase/recombinase y4gCPRO_0000197576Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a03610.

Structurei

3D structure databases

ProteinModelPortaliP55459.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the 'phage' integrase family.Curated

Phylogenomic databases

eggNOGiCOG0582.
OMAiDWRTETI.
OrthoDBiEOG6ZKXN5.

Family and domain databases

Gene3Di1.10.443.10. 1 hit.
InterProiIPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
[Graphical view]
PfamiPF00589. Phage_integrase. 1 hit.
[Graphical view]
SUPFAMiSSF56349. SSF56349. 1 hit.

Sequencei

Sequence statusi: Complete.

P55459-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPSILERDQI AAVLVSASRD KTPAGLRDHA ILQLLATYGL RSGEIRNMRI
60 70 80 90 100
EDIDWRTETI RVRHSKTQAY TLLPLTEPVG EAILVYLRSG RPATDARELF
110 120 130 140 150
VRTRAPYRKL DKLYSMVRRR LRDAGVKPRG KRGPHIFRHA RATELLRAAV
160 170 180 190
PQKIIGELLG HRSIASTAPY LKLATEDLRA IALDLPGTEV SA
Length:192
Mass (Da):21,577
Last modified:November 1, 1997 - v1
Checksum:i5CE8A6304589CF70
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91677.1.
RefSeqiNP_443865.1. NC_000914.2.
WP_010875374.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91677; AAB91677; NGR_a03610.
GeneIDi962564.
KEGGirhi:NGR_a03610.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91677.1 .
RefSeqi NP_443865.1. NC_000914.2.
WP_010875374.1. NC_000914.2.

3D structure databases

ProteinModelPortali P55459.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_a03610.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB91677 ; AAB91677 ; NGR_a03610 .
GeneIDi 962564.
KEGGi rhi:NGR_a03610.

Phylogenomic databases

eggNOGi COG0582.
OMAi DWRTETI.
OrthoDBi EOG6ZKXN5.

Enzyme and pathway databases

BioCyci SFRE394:GBYN-6412-MONOMER.

Family and domain databases

Gene3Di 1.10.443.10. 1 hit.
InterProi IPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
[Graphical view ]
Pfami PF00589. Phage_integrase. 1 hit.
[Graphical view ]
SUPFAMi SSF56349. SSF56349. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4GC_RHISN
AccessioniPrimary (citable) accession number: P55459
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 26, 2014
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome, Transposable element

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3