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P55459

- Y4GC_RHISN

UniProt

P55459 - Y4GC_RHISN

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Protein
Putative integrase/recombinase y4gC
Gene
NGR_a03610, y4gC
Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei170 – 1701O-(3'-phospho-DNA)-tyrosine intermediate By similarity

GO - Molecular functioni

  1. DNA binding Source: InterPro

GO - Biological processi

  1. DNA integration Source: UniProtKB-KW
  2. DNA recombination Source: UniProtKB-KW
  3. establishment of integrated proviral latency Source: UniProtKB-KW
  4. viral entry into host cell Source: UniProtKB-KW
Complete GO annotation...

Keywords - Biological processi

DNA integration, DNA recombination, Viral genome integration, Virus entry into host cell

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6412-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative integrase/recombinase y4gC
Gene namesi
Ordered Locus Names:NGR_a03610
ORF Names:y4gC
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 192192Putative integrase/recombinase y4gC
PRO_0000197576Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a03610.

Structurei

3D structure databases

ProteinModelPortaliP55459.

Family & Domainsi

Sequence similaritiesi

Belongs to the 'phage' integrase family.

Phylogenomic databases

eggNOGiCOG0582.
OMAiDWRTETI.
OrthoDBiEOG6ZKXN5.

Family and domain databases

Gene3Di1.10.443.10. 1 hit.
InterProiIPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
[Graphical view]
PfamiPF00589. Phage_integrase. 1 hit.
[Graphical view]
SUPFAMiSSF56349. SSF56349. 1 hit.

Sequencei

Sequence statusi: Complete.

P55459-1 [UniParc]FASTAAdd to Basket

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MPSILERDQI AAVLVSASRD KTPAGLRDHA ILQLLATYGL RSGEIRNMRI    50
EDIDWRTETI RVRHSKTQAY TLLPLTEPVG EAILVYLRSG RPATDARELF 100
VRTRAPYRKL DKLYSMVRRR LRDAGVKPRG KRGPHIFRHA RATELLRAAV 150
PQKIIGELLG HRSIASTAPY LKLATEDLRA IALDLPGTEV SA 192
Length:192
Mass (Da):21,577
Last modified:November 1, 1997 - v1
Checksum:i5CE8A6304589CF70
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB91677.1.
RefSeqiNP_443865.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91677; AAB91677; NGR_a03610.
GeneIDi962564.
KEGGirhi:NGR_a03610.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB91677.1 .
RefSeqi NP_443865.1. NC_000914.2.

3D structure databases

ProteinModelPortali P55459.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_a03610.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB91677 ; AAB91677 ; NGR_a03610 .
GeneIDi 962564.
KEGGi rhi:NGR_a03610.

Phylogenomic databases

eggNOGi COG0582.
OMAi DWRTETI.
OrthoDBi EOG6ZKXN5.

Enzyme and pathway databases

BioCyci SFRE394:GBYN-6412-MONOMER.

Family and domain databases

Gene3Di 1.10.443.10. 1 hit.
InterProi IPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
[Graphical view ]
Pfami PF00589. Phage_integrase. 1 hit.
[Graphical view ]
SUPFAMi SSF56349. SSF56349. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4GC_RHISN
AccessioniPrimary (citable) accession number: P55459
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 13, 2013
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Transposable element

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3