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P55459

- Y4GC_RHISN

UniProt

P55459 - Y4GC_RHISN

Protein

Putative integrase/recombinase y4gC

Gene

NGR_a03610

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 66 (01 Oct 2014)
      Sequence version 1 (01 Nov 1997)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei170 – 1701O-(3'-phospho-DNA)-tyrosine intermediateBy similarity

    GO - Molecular functioni

    1. DNA binding Source: InterPro

    GO - Biological processi

    1. DNA integration Source: UniProtKB-KW
    2. DNA recombination Source: UniProtKB-KW
    3. establishment of integrated proviral latency Source: UniProtKB-KW
    4. viral entry into host cell Source: UniProtKB-KW

    Keywords - Biological processi

    DNA integration, DNA recombination, Viral genome integration, Virus entry into host cell

    Enzyme and pathway databases

    BioCyciSFRE394:GBYN-6412-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative integrase/recombinase y4gC
    Gene namesi
    Ordered Locus Names:NGR_a03610
    ORF Names:y4gC
    Encoded oniPlasmid sym pNGR234a0 Publication
    OrganismiRhizobium sp. (strain NGR234)
    Taxonomic identifieri394 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
    ProteomesiUP000001054: Plasmid sym pNGR234a

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 192192Putative integrase/recombinase y4gCPRO_0000197576Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi394.NGR_a03610.

    Structurei

    3D structure databases

    ProteinModelPortaliP55459.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the 'phage' integrase family.Curated

    Phylogenomic databases

    eggNOGiCOG0582.
    OMAiDWRTETI.
    OrthoDBiEOG6ZKXN5.

    Family and domain databases

    Gene3Di1.10.443.10. 1 hit.
    InterProiIPR011010. DNA_brk_join_enz.
    IPR013762. Integrase-like_cat-core.
    IPR002104. Integrase_catalytic.
    [Graphical view]
    PfamiPF00589. Phage_integrase. 1 hit.
    [Graphical view]
    SUPFAMiSSF56349. SSF56349. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    P55459-1 [UniParc]FASTAAdd to Basket

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    MPSILERDQI AAVLVSASRD KTPAGLRDHA ILQLLATYGL RSGEIRNMRI    50
    EDIDWRTETI RVRHSKTQAY TLLPLTEPVG EAILVYLRSG RPATDARELF 100
    VRTRAPYRKL DKLYSMVRRR LRDAGVKPRG KRGPHIFRHA RATELLRAAV 150
    PQKIIGELLG HRSIASTAPY LKLATEDLRA IALDLPGTEV SA 192
    Length:192
    Mass (Da):21,577
    Last modified:November 1, 1997 - v1
    Checksum:i5CE8A6304589CF70
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91677.1.
    RefSeqiNP_443865.1. NC_000914.2.

    Genome annotation databases

    EnsemblBacteriaiAAB91677; AAB91677; NGR_a03610.
    GeneIDi962564.
    KEGGirhi:NGR_a03610.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    U00090 Genomic DNA. Translation: AAB91677.1 .
    RefSeqi NP_443865.1. NC_000914.2.

    3D structure databases

    ProteinModelPortali P55459.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 394.NGR_a03610.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAB91677 ; AAB91677 ; NGR_a03610 .
    GeneIDi 962564.
    KEGGi rhi:NGR_a03610.

    Phylogenomic databases

    eggNOGi COG0582.
    OMAi DWRTETI.
    OrthoDBi EOG6ZKXN5.

    Enzyme and pathway databases

    BioCyci SFRE394:GBYN-6412-MONOMER.

    Family and domain databases

    Gene3Di 1.10.443.10. 1 hit.
    InterProi IPR011010. DNA_brk_join_enz.
    IPR013762. Integrase-like_cat-core.
    IPR002104. Integrase_catalytic.
    [Graphical view ]
    Pfami PF00589. Phage_integrase. 1 hit.
    [Graphical view ]
    SUPFAMi SSF56349. SSF56349. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Molecular basis of symbiosis between Rhizobium and legumes."
      Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
      Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NGR234.

    Entry informationi

    Entry nameiY4GC_RHISN
    AccessioniPrimary (citable) accession number: P55459
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 1, 1997
    Last sequence update: November 1, 1997
    Last modified: October 1, 2014
    This is version 66 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Plasmid, Reference proteome, Transposable element

    Documents

    1. Rhizobium plasmid pNGR234a
      Rhizobium plasmid pNGR234a: entries and gene names
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3