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P55459 (Y4GC_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified November 13, 2013. Version 65. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Putative integrase/recombinase y4gC
Gene names
Ordered Locus Names:NGR_a03610
ORF Names:y4gC
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length192 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the 'phage' integrase family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 192192Putative integrase/recombinase y4gC
PRO_0000197576

Sites

Active site1701O-(3'-phospho-DNA)-tyrosine intermediate By similarity

Sequences

Sequence LengthMass (Da)Tools
P55459 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 5CE8A6304589CF70

FASTA19221,577
        10         20         30         40         50         60 
MPSILERDQI AAVLVSASRD KTPAGLRDHA ILQLLATYGL RSGEIRNMRI EDIDWRTETI 

        70         80         90        100        110        120 
RVRHSKTQAY TLLPLTEPVG EAILVYLRSG RPATDARELF VRTRAPYRKL DKLYSMVRRR 

       130        140        150        160        170        180 
LRDAGVKPRG KRGPHIFRHA RATELLRAAV PQKIIGELLG HRSIASTAPY LKLATEDLRA 

       190 
IALDLPGTEV SA 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB91677.1.
RefSeqNP_443865.1. NC_000914.2.

3D structure databases

ProteinModelPortalP55459.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a03610.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91677; AAB91677; NGR_a03610.
GeneID962564.
KEGGrhi:NGR_a03610.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0582.
OMADWRTETI.
OrthoDBEOG6ZKXN5.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6412-MONOMER.

Family and domain databases

Gene3D1.10.443.10. 1 hit.
InterProIPR011010. DNA_brk_join_enz.
IPR013762. Integrase-like_cat-core.
IPR002104. Integrase_catalytic.
[Graphical view]
PfamPF00589. Phage_integrase. 1 hit.
[Graphical view]
SUPFAMSSF56349. SSF56349. 1 hit.
ProtoNetSearch...

Entry information

Entry nameY4GC_RHISN
AccessionPrimary (citable) accession number: P55459
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 13, 2013
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names