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P55455 (Y4FQ_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified November 13, 2013. Version 61. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized protein y4fQ
Gene names
Ordered Locus Names:NGR_a03650
ORF Names:y4fQ
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length392 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the ROK (NagC/XylR) family.

Ontologies

Keywords
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Cellular_componentintracellular

Inferred from electronic annotation. Source: InterPro

   Molecular_functionsequence-specific DNA binding transcription factor activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 392392Uncharacterized protein y4fQ
PRO_0000095723

Sequences

Sequence LengthMass (Da)Tools
P55455 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: D1663FEDAAFFA0E8

FASTA39241,576
        10         20         30         40         50         60 
MPVLPELSLN ERRLVELIFK NRGVARIELA QMSGMTGATV TRLVASLLDL GLITEEADRS 

        70         80         90        100        110        120 
GAQGQPRRLL QLQARRFFAA GVTFSVTRME VVIIDLSGSI VATRSVEVHT ASPMEVVEAA 

       130        140        150        160        170        180 
QAAVDDMLAA LSIQKNDLVG IGVSVPGNFG TASNLLKAHP FFPAFEDGQA IEAFREAFDV 

       190        200        210        220        230        240 
PCHVENDGTA AALGEYVFAG DNVLDDPLFF IHIGHGVGGG AVIDGRPYGG AHGNACLPGV 

       250        260        270        280        290        300 
LYPYDQPRPS GQDLLATLHA AGFHLRDFEE MDAMPQAARS TVIEWITRAG AQLRQAVRVA 

       310        320        330        340        350        360 
TAFFDPARIV VGGRLPGDLN KRLVETILSE PIEGPSRGLP TAPVSVSRLG IRAGAVGAGC 

       370        380        390 
VPFFRAFFTG AVANGGSAYL NGRRPFPRTP AQ 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB91673.1.
RefSeqNP_443861.1. NC_000914.2.

3D structure databases

ProteinModelPortalP55455.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a03650.

Proteomic databases

PRIDEP55455.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91673; AAB91673; NGR_a03650.
GeneID962305.
KEGGrhi:NGR_a03650.
PATRIC32301475. VBIRhiSp122450_0373.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1940.
OMAHENDGNT.
OrthoDBEOG622PS4.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6416-MONOMER.

Family and domain databases

Gene3D1.10.10.10. 1 hit.
InterProIPR000600. ROK.
IPR018335. Tscrpt_reg_HTH_Crp-type_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamPF00480. ROK. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY4FQ_RHISN
AccessionPrimary (citable) accession number: P55455
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 13, 2013
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names