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Protein

Uncharacterized protein y4fQ

Gene

NGR_a03650

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. sequence-specific DNA binding transcription factor activity Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-5572-MONOMER.
RETL1328306-WGS:GSTH-6515-MONOMER.
SFRE394:GBYN-6416-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein y4fQ
Gene namesi
Ordered Locus Names:NGR_a03650
ORF Names:y4fQ
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

Subcellular locationi

GO - Cellular componenti

  1. intracellular Source: InterPro
Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 392392Uncharacterized protein y4fQPRO_0000095723Add
BLAST

Proteomic databases

PRIDEiP55455.

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a03650.

Structurei

3D structure databases

ProteinModelPortaliP55455.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ROK (NagC/XylR) family.Curated

Phylogenomic databases

eggNOGiCOG1940.
OMAiHENDGNT.
OrthoDBiEOG622PS4.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000600. ROK.
IPR018335. Tscrpt_reg_HTH_Crp-type_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00480. ROK. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55455-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MPVLPELSLN ERRLVELIFK NRGVARIELA QMSGMTGATV TRLVASLLDL
60 70 80 90 100
GLITEEADRS GAQGQPRRLL QLQARRFFAA GVTFSVTRME VVIIDLSGSI
110 120 130 140 150
VATRSVEVHT ASPMEVVEAA QAAVDDMLAA LSIQKNDLVG IGVSVPGNFG
160 170 180 190 200
TASNLLKAHP FFPAFEDGQA IEAFREAFDV PCHVENDGTA AALGEYVFAG
210 220 230 240 250
DNVLDDPLFF IHIGHGVGGG AVIDGRPYGG AHGNACLPGV LYPYDQPRPS
260 270 280 290 300
GQDLLATLHA AGFHLRDFEE MDAMPQAARS TVIEWITRAG AQLRQAVRVA
310 320 330 340 350
TAFFDPARIV VGGRLPGDLN KRLVETILSE PIEGPSRGLP TAPVSVSRLG
360 370 380 390
IRAGAVGAGC VPFFRAFFTG AVANGGSAYL NGRRPFPRTP AQ
Length:392
Mass (Da):41,576
Last modified:November 1, 1997 - v1
Checksum:iD1663FEDAAFFA0E8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91673.1.
RefSeqiNP_443861.1. NC_000914.2.
WP_010875378.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91673; AAB91673; NGR_a03650.
GeneIDi962305.
KEGGirhi:NGR_a03650.
PATRICi32301475. VBIRhiSp122450_0373.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91673.1.
RefSeqiNP_443861.1. NC_000914.2.
WP_010875378.1. NC_000914.2.

3D structure databases

ProteinModelPortaliP55455.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi394.NGR_a03650.

Proteomic databases

PRIDEiP55455.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91673; AAB91673; NGR_a03650.
GeneIDi962305.
KEGGirhi:NGR_a03650.
PATRICi32301475. VBIRhiSp122450_0373.

Phylogenomic databases

eggNOGiCOG1940.
OMAiHENDGNT.
OrthoDBiEOG622PS4.

Enzyme and pathway databases

BioCyciRETL1328306-WGS:GSTH-5572-MONOMER.
RETL1328306-WGS:GSTH-6515-MONOMER.
SFRE394:GBYN-6416-MONOMER.

Family and domain databases

Gene3Di1.10.10.10. 1 hit.
InterProiIPR000600. ROK.
IPR018335. Tscrpt_reg_HTH_Crp-type_CS.
IPR011991. WHTH_DNA-bd_dom.
[Graphical view]
PfamiPF00480. ROK. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4FQ_RHISN
AccessioniPrimary (citable) accession number: P55455
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: January 7, 2015
This is version 66 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.