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Protein

Uncharacterized protein y4fB

Gene

NGR_a03790

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. hydrolase activity Source: InterPro
  2. metal ion binding Source: InterPro
  3. nucleic acid binding Source: InterPro
Complete GO annotation...

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6430-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized protein y4fB
Gene namesi
Ordered Locus Names:NGR_a03790
ORF Names:y4fB
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054 Componenti: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 664664Uncharacterized protein y4fBPRO_0000200834Add
BLAST

Proteomic databases

PRIDEiP55440.

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a03790.

Structurei

3D structure databases

ProteinModelPortaliP55440.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1864.
HOGENOMiHOG000274111.
KOiK01173.
OMAiTNCSPQH.
OrthoDBiEOG6Z0Q78.

Family and domain databases

Gene3Di3.40.570.10. 1 hit.
InterProiIPR001604. DNA/RNA_non-sp_Endonuclease.
IPR020821. Extracellular_endonuc_su_A.
IPR009003. Trypsin-like_Pept_dom.
[Graphical view]
PfamiPF01223. Endonuclease_NS. 1 hit.
[Graphical view]
SMARTiSM00892. Endonuclease_NS. 1 hit.
SM00477. NUC. 1 hit.
[Graphical view]
SUPFAMiSSF50494. SSF50494. 1 hit.

Sequencei

Sequence statusi: Complete.

P55440-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEISKFADEQ LADQIAAGRE AVPEVDPIRL IEQVVHRARA GAGVDFDVFE
60 70 80 90 100
SLIGEIDLVE INYLERGLMA SRAVCRINVP APVGDSSDWG TGFLIGPRLL
110 120 130 140 150
LTNNHVIDSA EDALKATVEF GYELDAEGRL KRTTRFRLSP QDGFVTSPRD
160 170 180 190 200
ALDYTVVAIE ENSEDGATPI SDFGFLRLDA RTGKTEVGQY ATIIQHPDAK
210 220 230 240 250
TKRISLRENK FVKYGDEADP ERDNFLWYSS DTANGSSGAA VFTDAWQVVC
260 270 280 290 300
LHHAGVPDRR MIDGKEHWVL TDKTTAPARI AINLPVDKVH WLANEGVRIS
310 320 330 340 350
KLIADVQERI AAPGFARSTL VDDLVADATG VKAFAGTTPG ESIVGPPLVA
360 370 380 390 400
APALRLVAAE ARRRPTRHTH PANYFDGREG YRSDFLPVEI PLPTLGVNAL
410 420 430 440 450
RHGSPAKVTG AADDVLRYQH FSVVLNANPK RKMAFYTAVN IDGARWTNLE
460 470 480 490 500
RGNDVWFYDP RIPEELQNGD ELYGDEPVPS KNYFDRGHLV RRLDPVWGEI
510 520 530 540 550
RVAKQANDDT FQWTNCSPQY WGFNQGADLW QGLENFLLYN TDDENVQASV
560 570 580 590 600
FSGPLFRADD EEHRGILIPQ FFWKVIAVTD KNDRLYTSGY MVSQQDYALD
610 620 630 640 650
IPFERLPVGP NSTKPGQNFQ VPVAKIIEDT GIVFADEILS ADAYSGPSTG
660
RALRTVADIQ HPRR
Length:664
Mass (Da):73,732
Last modified:November 1, 1997 - v1
Checksum:iCFCC041FB73C064F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91659.1.
RefSeqiNP_443847.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91659; AAB91659; NGR_a03790.
GeneIDi962298.
KEGGirhi:NGR_a03790.
PATRICi32301503. VBIRhiSp122450_0387.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91659.1.
RefSeqiNP_443847.1. NC_000914.2.

3D structure databases

ProteinModelPortaliP55440.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi394.NGR_a03790.

Proteomic databases

PRIDEiP55440.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91659; AAB91659; NGR_a03790.
GeneIDi962298.
KEGGirhi:NGR_a03790.
PATRICi32301503. VBIRhiSp122450_0387.

Phylogenomic databases

eggNOGiCOG1864.
HOGENOMiHOG000274111.
KOiK01173.
OMAiTNCSPQH.
OrthoDBiEOG6Z0Q78.

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6430-MONOMER.

Family and domain databases

Gene3Di3.40.570.10. 1 hit.
InterProiIPR001604. DNA/RNA_non-sp_Endonuclease.
IPR020821. Extracellular_endonuc_su_A.
IPR009003. Trypsin-like_Pept_dom.
[Graphical view]
PfamiPF01223. Endonuclease_NS. 1 hit.
[Graphical view]
SMARTiSM00892. Endonuclease_NS. 1 hit.
SM00477. NUC. 1 hit.
[Graphical view]
SUPFAMiSSF50494. SSF50494. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4FB_RHISN
AccessioniPrimary (citable) accession number: P55440
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: April 29, 2015
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.