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Protein

Uncharacterized short-chain type dehydrogenase/reductase y4eK

Gene

NGR_a03840

Organism
Sinorhizobium fredii (strain NBRC 101917 / NGR234)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei134SubstrateBy similarity1
Active sitei147Proton acceptorPROSITE-ProRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi8 – 32NAD or NADPBy similarityAdd BLAST25

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized short-chain type dehydrogenase/reductase y4eK (EC:1.-.-.-)
Gene namesi
Ordered Locus Names:NGR_a03840
ORF Names:y4eK
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiSinorhizobium fredii (strain NBRC 101917 / NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
Proteomesi
  • UP000001054 Componenti: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000548851 – 248Uncharacterized short-chain type dehydrogenase/reductase y4eKAdd BLAST248

Structurei

3D structure databases

ProteinModelPortaliP55434.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

OMAiVQINILP.
OrthoDBiPOG091H00PO.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR020904. Sc_DH/Rdtase_CS.
IPR002347. SDR_fam.
[Graphical view]
PANTHERiPTHR24322. PTHR24322. 2 hits.
PfamiPF00106. adh_short. 1 hit.
[Graphical view]
PRINTSiPR00081. GDHRDH.
PR00080. SDRFAMILY.
SUPFAMiSSF51735. SSF51735. 1 hit.
PROSITEiPS00061. ADH_SHORT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55434-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MHPMNRYEVA LVTGASSGIG KAIALELASA GLRVLALGRD RAALDELHST
60 70 80 90 100
AGIVPVVFDL SDVSEVYGKI AGEKIDVLVN NAGLLTASAS LVDLSEDDID
110 120 130 140 150
AMIDINIRSV FKLTRHVLKQ MIERRRGHIF FTGSSGGLAP HPNSSVYGAT
160 170 180 190 200
KAAVSLFSSA LRCDLIGLPI RVTELFPGRV ETNLYRTALG KEGAKKKLYD
210 220 230 240
DNEAIQPEHM ARLLRTALEL PDFVDVTRLE VMPTGQVVGG AQMSKLSR
Length:248
Mass (Da):26,680
Last modified:November 1, 1997 - v1
Checksum:iBF8AD585C068A728
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91654.1.
RefSeqiNP_443842.1. NC_000914.2.
WP_010875396.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91654; AAB91654; NGR_a03840.
GeneIDi962291.
KEGGirhi:NGR_a03840.
PATRICi32301523. VBIRhiSp122450_0397.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U00090 Genomic DNA. Translation: AAB91654.1.
RefSeqiNP_443842.1. NC_000914.2.
WP_010875396.1. NC_000914.2.

3D structure databases

ProteinModelPortaliP55434.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAB91654; AAB91654; NGR_a03840.
GeneIDi962291.
KEGGirhi:NGR_a03840.
PATRICi32301523. VBIRhiSp122450_0397.

Phylogenomic databases

OMAiVQINILP.
OrthoDBiPOG091H00PO.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR020904. Sc_DH/Rdtase_CS.
IPR002347. SDR_fam.
[Graphical view]
PANTHERiPTHR24322. PTHR24322. 2 hits.
PfamiPF00106. adh_short. 1 hit.
[Graphical view]
PRINTSiPR00081. GDHRDH.
PR00080. SDRFAMILY.
SUPFAMiSSF51735. SSF51735. 1 hit.
PROSITEiPS00061. ADH_SHORT. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiY4EK_SINFN
AccessioniPrimary (citable) accession number: P55434
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 2, 2016
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.