Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

P55434 (Y4EK_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified November 13, 2013. Version 69. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Uncharacterized short-chain type dehydrogenase/reductase y4eK

EC=1.-.-.-
Gene names
Ordered Locus Names:NGR_a03840
ORF Names:y4eK
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length248 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the short-chain dehydrogenases/reductases (SDR) family.

Ontologies

Keywords
   Molecular functionOxidoreductase
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Molecular_functionoxidoreductase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 248248Uncharacterized short-chain type dehydrogenase/reductase y4eK
PRO_0000054885

Regions

Nucleotide binding8 – 3225NAD or NADP By similarity

Sites

Active site1471Proton acceptor By similarity
Binding site1341Substrate By similarity

Sequences

Sequence LengthMass (Da)Tools
P55434 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: BF8AD585C068A728

FASTA24826,680
        10         20         30         40         50         60 
MHPMNRYEVA LVTGASSGIG KAIALELASA GLRVLALGRD RAALDELHST AGIVPVVFDL 

        70         80         90        100        110        120 
SDVSEVYGKI AGEKIDVLVN NAGLLTASAS LVDLSEDDID AMIDINIRSV FKLTRHVLKQ 

       130        140        150        160        170        180 
MIERRRGHIF FTGSSGGLAP HPNSSVYGAT KAAVSLFSSA LRCDLIGLPI RVTELFPGRV 

       190        200        210        220        230        240 
ETNLYRTALG KEGAKKKLYD DNEAIQPEHM ARLLRTALEL PDFVDVTRLE VMPTGQVVGG 


AQMSKLSR 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB91654.1.
RefSeqNP_443842.1. NC_000914.2.

3D structure databases

ProteinModelPortalP55434.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a03840.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91654; AAB91654; NGR_a03840.
GeneID962291.
KEGGrhi:NGR_a03840.
PATRIC32301523. VBIRhiSp122450_0397.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG4221.
OMAAMIDINI.
OrthoDBEOG6N3CR8.
ProtClustDBCLSK2484862.

Enzyme and pathway databases

BioCycSFRE394:GBYN-6435-MONOMER.

Family and domain databases

Gene3D3.40.50.720. 1 hit.
InterProIPR002198. DH_sc/Rdtase_SDR.
IPR002347. Glc/ribitol_DH.
IPR016040. NAD(P)-bd_dom.
IPR020904. Sc_DH/Rdtase_CS.
[Graphical view]
PfamPF00106. adh_short. 1 hit.
[Graphical view]
PIRSFPIRSF000126. 11-beta-HSD1. 1 hit.
PRINTSPR00081. GDHRDH.
PR00080. SDRFAMILY.
PROSITEPS00061. ADH_SHORT. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY4EK_RHISN
AccessionPrimary (citable) accession number: P55434
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: November 13, 2013
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names