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P55434

- Y4EK_RHISN

UniProt

P55434 - Y4EK_RHISN

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Protein

Uncharacterized short-chain type dehydrogenase/reductase y4eK

Gene

NGR_a03840

Organism
Rhizobium sp. (strain NGR234)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Binding sitei134 – 1341SubstrateBy similarity
Active sitei147 – 1471Proton acceptorPROSITE-ProRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi8 – 3225NAD or NADPBy similarityAdd
BLAST

GO - Molecular functioni

  1. oxidoreductase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Oxidoreductase

Enzyme and pathway databases

BioCyciSFRE394:GBYN-6435-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Uncharacterized short-chain type dehydrogenase/reductase y4eK (EC:1.-.-.-)
Gene namesi
Ordered Locus Names:NGR_a03840
ORF Names:y4eK
Encoded oniPlasmid sym pNGR234a0 Publication
OrganismiRhizobium sp. (strain NGR234)
Taxonomic identifieri394 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium
ProteomesiUP000001054: Plasmid sym pNGR234a

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 248248Uncharacterized short-chain type dehydrogenase/reductase y4eKPRO_0000054885Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi394.NGR_a03840.

Structurei

3D structure databases

ProteinModelPortaliP55434.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG4221.
OMAiAMIDINI.
OrthoDBiEOG6N3CR8.

Family and domain databases

Gene3Di3.40.50.720. 1 hit.
InterProiIPR002198. DH_sc/Rdtase_SDR.
IPR002347. Glc/ribitol_DH.
IPR016040. NAD(P)-bd_dom.
IPR020904. Sc_DH/Rdtase_CS.
[Graphical view]
PfamiPF00106. adh_short. 1 hit.
[Graphical view]
PIRSFiPIRSF000126. 11-beta-HSD1. 1 hit.
PRINTSiPR00081. GDHRDH.
PR00080. SDRFAMILY.
PROSITEiPS00061. ADH_SHORT. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

P55434-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MHPMNRYEVA LVTGASSGIG KAIALELASA GLRVLALGRD RAALDELHST
60 70 80 90 100
AGIVPVVFDL SDVSEVYGKI AGEKIDVLVN NAGLLTASAS LVDLSEDDID
110 120 130 140 150
AMIDINIRSV FKLTRHVLKQ MIERRRGHIF FTGSSGGLAP HPNSSVYGAT
160 170 180 190 200
KAAVSLFSSA LRCDLIGLPI RVTELFPGRV ETNLYRTALG KEGAKKKLYD
210 220 230 240
DNEAIQPEHM ARLLRTALEL PDFVDVTRLE VMPTGQVVGG AQMSKLSR
Length:248
Mass (Da):26,680
Last modified:November 1, 1997 - v1
Checksum:iBF8AD585C068A728
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB91654.1.
RefSeqiNP_443842.1. NC_000914.2.

Genome annotation databases

EnsemblBacteriaiAAB91654; AAB91654; NGR_a03840.
GeneIDi962291.
KEGGirhi:NGR_a03840.
PATRICi32301523. VBIRhiSp122450_0397.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
U00090 Genomic DNA. Translation: AAB91654.1 .
RefSeqi NP_443842.1. NC_000914.2.

3D structure databases

ProteinModelPortali P55434.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 394.NGR_a03840.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAB91654 ; AAB91654 ; NGR_a03840 .
GeneIDi 962291.
KEGGi rhi:NGR_a03840.
PATRICi 32301523. VBIRhiSp122450_0397.

Phylogenomic databases

eggNOGi COG4221.
OMAi AMIDINI.
OrthoDBi EOG6N3CR8.

Enzyme and pathway databases

BioCyci SFRE394:GBYN-6435-MONOMER.

Family and domain databases

Gene3Di 3.40.50.720. 1 hit.
InterProi IPR002198. DH_sc/Rdtase_SDR.
IPR002347. Glc/ribitol_DH.
IPR016040. NAD(P)-bd_dom.
IPR020904. Sc_DH/Rdtase_CS.
[Graphical view ]
Pfami PF00106. adh_short. 1 hit.
[Graphical view ]
PIRSFi PIRSF000126. 11-beta-HSD1. 1 hit.
PRINTSi PR00081. GDHRDH.
PR00080. SDRFAMILY.
PROSITEi PS00061. ADH_SHORT. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Molecular basis of symbiosis between Rhizobium and legumes."
    Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
    Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NGR234.

Entry informationi

Entry nameiY4EK_RHISN
AccessioniPrimary (citable) accession number: P55434
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: October 29, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Plasmid, Reference proteome

Documents

  1. Rhizobium plasmid pNGR234a
    Rhizobium plasmid pNGR234a: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3