P55429 (Y4EF_RHISN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Putative integrase/recombinase y4eF

Gene names

Ordered Locus Names:	NGR_a03870
ORF Names:	y4eF

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium

Protein attributes

Sequence length	251 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the 'phage' integrase family.

Ontologies

Keywords
Biological process	DNA integration DNA recombination Initiation of viral infection Viral genome integration
Technical term	Complete proteome Plasmid Transposable element
Gene Ontology (GO)
Biological process	DNA integration Inferred from electronic annotation. Source: UniProtKB-KW DNA recombination Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 251	251	Putative integrase/recombinase y4eF		PRO_0000197575
Sites
	Active site	218	1	O-(3'-phospho-DNA)-tyrosine intermediate By similarity

Sequences

	Sequence		Length	Mass (Da)
	P55429 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 20D2FDB4E765AE14	FASTA	251	28,449
	10 20 30 40 50 60 MLGREDIRTY QVYLANEKKL APGSIHIALS ALRFFFNVTL ERDWAPEEVL PLPKKPQKLP 70 80 90 100 110 120 IILSPDEVQH FLGCVADVKH HAILTTCYAA GLRISEAVQL KPTDIDSQRM VVRVEHGKGQ 130 140 150 160 170 180 KDRYVMLSPK LLEILRDYWR MWRPEAWLFP GDRAGHPITR YAVGQACVKP HDLSRLSKPV 190 200 210 220 230 240 TPHSLRHAFV VHLLEAGADV RTIQPLLGHR SLATTAHYLR IATNKVCATE SPFELLPRPA 250 PTPPPSKPQY F

References

[1]	"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed: 9163424] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.
[2]	"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U00090 Genomic DNA. Translation: AAB91651.1.
RefSeq	NP_443839.1. NC_000914.2.
3D structure databases
ProteinModelPortal	P55429.
ModBase	Search...
Protein-protein interaction databases
STRING	P55429.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	962288.
GenomeReviews	Gene locus NGR_a03870 in contig U00090_GR.
KEGG	rhi:NGR_a03870.
PATRIC	32301535. VBIRhiSp122450_0403.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG727654.
OMA	HERFNEE.
ProtClustDB	CLSK544552.
Family and domain databases
InterPro	IPR011010. DNA_brk_join_enz. IPR013762. Integrase-like_cat-core. IPR002104. Integrase_catalytic. [Graphical view]
Gene3D	G3DSA:1.10.443.10. Phage_intgr_like. 1 hit.
Pfam	PF00589. Phage_integrase. 1 hit. [Graphical view]
SUPFAM	SSF56349. DNA_brk_join_enz. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Y4EF_RHISN

Accession

Primary (citable) accession number: P55429

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	January 25, 2012
This is version 62 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program