Reviewed, UniProtKB/Swiss-Prot P55427 (Y4ED_RHISN)

Names and origin

Protein names

Recommended name:
    Uncharacterized protein y4eD

Gene names

Ordered Locus Names:	NGR_a03890
ORF Names:	y4eD

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Rhizobium

Protein attributes

Sequence length	375 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Predicted.

General annotation (Comments)

Sequence similarities

Contains 1 GDPD domain.

Ontologies

Keywords
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
Biological process	glycerol metabolic process Inferred from electronic annotation. Source: InterPro lipid metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	glycerophosphodiester phosphodiesterase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 375	375	Uncharacterized protein y4eD		PRO_0000200830

Sequences

	Sequence		Length	Mass (Da)
	P55427-1 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 2411DAF3C3EBE3DF	FASTA	375	42,230
	10 20 30 40 50 60 MRVALISTSI FALCCSSNVR AEAVLPVNPS PYLVGAITRN MFRVPKPDQD LVLLSAHRGS 70 80 90 100 110 120 WEVYPENSAY ALQDAWNSQI EAVEVDARFT ADKEVILSHD YRMERESTGT GFLYDQNYSQ 130 140 150 160 170 180 VQQADLRDRH GRVFKDSRGR NAKFMTFSAA LDLLAQYVTD DGHGYVMIID VKGAVDDQDP 190 200 210 220 230 240 TDPIELTQRC LDILAAKKNP KLSKAVVFKL KAKDAVDIGT FLNRTTYDPN VMGGLIVVEN 250 260 270 280 290 300 PDDQNVKDSN YDPHEDTIYD QWNVAPFPVQ FEMNQFYKGD GLQAYLDYVD QKQGFATYHE 310 320 330 340 350 360 SNYYPEGVAN SAGKCCFEHN TDPRSVAHGG IVPDYRGEPE MAIVNRTNLI TTDWPDVVAD 370 MLRQLGRRNT SKLSR

References

[1]

"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed: 9163424] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

[2]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed: 19376903] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBLGenBankDDBJ	U00090 Genomic DNA. Translation: AAB91649.1.
RefSeq	NP_443837.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	962286.
GenomeReviews	Gene locus NGR_a03890 in contig U00090_GR.
Organism-specific databases
CMR	Search...
Family and domain databases
InterPro	IPR004129. GlyceroP-diester-Pdiesterase. IPR017946. PLC-like_Pdiesterase_TIM-brl. [Graphical view]
Gene3D	G3DSA:3.20.20.190. PLC-like_Pdiesterase_TIM-brl. 1 hit.
PANTHER	PTHR23344. GDPD. 1 hit.
Pfam	PF03009. GDPD. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Y4ED_RHISN

Accession

Primary (citable) accession number: P55427

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	September 22, 2009
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)