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P55420 (TRAD_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 50. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable conjugal transfer protein TraD
Gene names
Name:traD
Ordered Locus Names:NGR_a03960
ORF Names:y4dU
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length71 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the TraD family.

Ontologies

Keywords
   Biological processConjugation
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Biological_processconjugation

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 7171Probable conjugal transfer protein TraD
PRO_0000065605

Sequences

Sequence LengthMass (Da)Tools
P55420 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: 9448FDEC63B61BA7

FASTA717,773
        10         20         30         40         50         60 
MARSATSDAR KKDTREKIEL GGLIVKAGLR YEKRVLLLGA LVDLSRRLNS DESERARLIA 

        70 
IGAEAFGDDG E 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB92441.1.
RefSeqNP_443830.1. NC_000914.2.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a03960.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB92441; AAB92441; NGR_a03960.
GeneID962307.
KEGGrhi:NGR_a03960.
PATRIC32301563. VBIRhiSp122450_0417.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGNOG145755.
HOGENOMHOG000138065.
OMASDDRKKD.
OrthoDBEOG6G4W13.

Enzyme and pathway databases

BioCycRETL1328306-WGS:GSTH-6569-MONOMER.
SFRE394:GBYN-6447-MONOMER.

Family and domain databases

InterProIPR009444. Conjugal_tfr_TraD_a-type.
[Graphical view]
PfamPF06412. TraD. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTRAD_RHISN
AccessionPrimary (citable) accession number: P55420
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: July 9, 2014
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names