P55420 (TRAD_RHISN) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Probable conjugal transfer protein TraD

Gene names

Name:	traD
Ordered Locus Names:	NGR_a03960
ORF Names:	y4dU

Encoded on

Plasmid sym pNGR234a

Organism

Rhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]

Taxonomic identifier

394 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Rhizobiaceae › Sinorhizobium/Ensifer group › Sinorhizobium › Sinorhizobium fredii group › Rhizobium fredii

Protein attributes

Sequence length	71 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the TraD family.

Ontologies

Keywords
Biological process	Conjugation
Technical term	Complete proteome Plasmid
Gene Ontology (GO)
Biological_process	conjugation Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 71	71	Probable conjugal transfer protein TraD		PRO_0000065605

Sequences

	Sequence		Length	Mass (Da)
	P55420 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 9448FDEC63B61BA7	FASTA	71	7,773
	10 20 30 40 50 60 MARSATSDAR KKDTREKIEL GGLIVKAGLR YEKRVLLLGA LVDLSRRLNS DESERARLIA 70 IGAEAFGDDG E

References

[1]

"Molecular basis of symbiosis between Rhizobium and legumes." Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X. Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

[2]

"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems." Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R. Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: NGR234.

Cross-references

Sequence databases
EMBL GenBank DDBJ	U00090 Genomic DNA. Translation: AAB92441.1.
RefSeq	NP_443830.1. NC_000914.2.
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	394.NGR_a03960.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	AAB92441; AAB92441; NGR_a03960.
GeneID	962307.
KEGG	rhi:NGR_a03960.
PATRIC	32301563. VBIRhiSp122450_0417.
Organism-specific databases
CMR	Search...
Phylogenomic databases
eggNOG	NOG145755.
HOGENOM	HOG000138065.
OMA	SDDRKKD.
ProtClustDB	PRK13847.
Enzyme and pathway databases
BioCyc	SFRE394:GBYN-6447-MONOMER.
Family and domain databases
InterPro	IPR009444. Conjugal_tfr_TraD_a-type. [Graphical view]
Pfam	PF06412. TraD. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

TRAD_RHISN

Accession

Primary (citable) accession number: P55420

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	May 29, 2013
This is version 47 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program