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P55418 (TRAA_RHISN) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 65. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Probable conjugal transfer protein TraA
Gene names
Name:traA
Ordered Locus Names:NGR_a03980
ORF Names:y4dS
Encoded onPlasmid sym pNGR234a
OrganismRhizobium sp. (strain NGR234) [Complete proteome] [HAMAP]
Taxonomic identifier394 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeSinorhizobium/Ensifer groupSinorhizobium

Protein attributes

Sequence length1102 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the MobA/MobL family.

Ontologies

Keywords
   Biological processConjugation
   LigandATP-binding
Nucleotide-binding
   Technical termComplete proteome
Plasmid
Gene Ontology (GO)
   Biological_processunidirectional conjugation

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 11021102Probable conjugal transfer protein TraA
PRO_0000210855

Regions

Nucleotide binding404 – 4118ATP Potential

Sequences

Sequence LengthMass (Da)Tools
P55418 [UniParc].

Last modified November 1, 1997. Version 1.
Checksum: EC17A5528F7B9CAF

FASTA1,102123,034
        10         20         30         40         50         60 
MAVPHFSVSV VARGSGRSAV LSAAYRHCAR MDYEREARTI DYRAKQGLLH EEFVIPAESP 

        70         80         90        100        110        120 
EWLRSMIADR SVASASEAFW NKVEDFEKRS DAQLAKDVTI ALPIELTTEQ NIVLVRDFVE 

       130        140        150        160        170        180 
RHVTAKGMVA DWVYHDAPGN PHVHLMTTLR PLTADGFGAK KLAVVGPDGN SLRNDAGKIV 

       190        200        210        220        230        240 
YELWAGSLDD FNAFRDGWFA CQNRHLALAG LDIRIDGRSF EKQGIELTPT IHLGVGTKAI 

       250        260        270        280        290        300 
ERKATTDDQA VSLERLELQE EKRAENARRI QRRPEIVLDL ITREKSVFDE RDVAKILHRY 

       310        320        330        340        350        360 
IDDPGVFHSL MARILQSPKT LRLERERIAF ATGIRAPAKY TTRELIRLEA EMGSRAIWLS 

       370        380        390        400        410        420 
RRSSHGVRKE VLEAAFSRHS RLSDEQKTAI EHVAGAERIA AVIGRAGAGK TTMMKAAREA 

       430        440        450        460        470        480 
WEAAGYRVVG GALAGKAAEG LEKEAGIASR TLSSWELRWN EGRKQLDDKT IFVLDEAGMV 

       490        500        510        520        530        540 
SSRQMALFVE TATKAGAKLV LVGDPEQLQP IEAGAAFRAI ADRIGYAELE TIYRQREQWM 

       550        560        570        580        590        600 
CDASLDLARG NVGKVVDTYR ANGRMMRSEL KAEAVQNLIA DWDRDYDPTK TTLILAHLRR 

       610        620        630        640        650        660 
DVRMLNQMAR AKLVERGIVD AGFSFKAEDG NRRFAPGDQI VFLKNEGALG VKNGMRGKVV 

       670        680        690        700        710        720 
EAAQNRIVAE IGEVEHRRQV MVESRFYNNL DHGYATTIHK SQGATVDRVK VLASLSLDRH 

       730        740        750        760        770        780 
LTYVAMTRHR EDLGVYYGAR SFAKSGGLIQ ILSQKNSKET TLDYEKATFY RQALRFAEAR 

       790        800        810        820        830        840 
GMHLVNVART IARDRLEWTV RQKQKLADLT QRLVAIGARF GLAVGAKTTN SQNLKETRPM 

       850        860        870        880        890        900 
VAGIATFPKS MEQAVADRLE VDPGLKKQWE DVSTRFHLVY TQPEVAFKAV NVDAMLKDET 

       910        920        930        940        950        960 
VAKSALSNMA NQPESYGSLK GKTGLLASRA DKQDRERAER NVPALAQSLS DYMRQRSRAE 

       970        980        990       1000       1010       1020 
QCYQADELAV RRKVAIEIPA LSPGARQTLE RVRDAIDRND LPAALEFALA DRQVKAELEG 

      1030       1040       1050       1060       1070       1080 
FARAVTERFG ERAFLPLAAK DTNGETFKTI TAGMNPGPKA EVQSAWNTMR TVQQLNAHER 

      1090       1100 
TIEALKQAET LRQTKSQGLS LK 

« Hide

References

[1]"Molecular basis of symbiosis between Rhizobium and legumes."
Freiberg C.A., Fellay R., Bairoch A., Broughton W.J., Rosenthal A., Perret X.
Nature 387:394-401(1997) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.
[2]"Rhizobium sp. strain NGR234 possesses a remarkable number of secretion systems."
Schmeisser C., Liesegang H., Krysciak D., Bakkou N., Le Quere A., Wollherr A., Heinemeyer I., Morgenstern B., Pommerening-Roeser A., Flores M., Palacios R., Brenner S., Gottschalk G., Schmitz R.A., Broughton W.J., Perret X., Strittmatter A.W., Streit W.R.
Appl. Environ. Microbiol. 75:4035-4045(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NGR234.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
U00090 Genomic DNA. Translation: AAB91648.1.
RefSeqNP_443828.1. NC_000914.2.

3D structure databases

ProteinModelPortalP55418.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING394.NGR_a03980.

Proteomic databases

PRIDEP55418.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAB91648; AAB91648; NGR_a03980.
GeneID962280.
KEGGrhi:NGR_a03980.
PATRIC32301567. VBIRhiSp122450_0419.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0507.
HOGENOMHOG000138087.
OMAVPTTHIG.
OrthoDBEOG6TXQS4.

Enzyme and pathway databases

BioCycRETL1328306-WGS:GSTH-6571-MONOMER.
SFRE394:GBYN-6449-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 3 hits.
InterProIPR005053. MobA_MobL.
IPR027417. P-loop_NTPase.
IPR014136. TraA_Ti.
IPR027785. UvrD_like_helicase_C.
[Graphical view]
PfamPF03389. MobA_MobL. 1 hit.
PF13538. UvrD_C_2. 1 hit.
[Graphical view]
SUPFAMSSF52540. SSF52540. 4 hits.
TIGRFAMsTIGR02768. TraA_Ti. 1 hit.
ProtoNetSearch...

Entry information

Entry nameTRAA_RHISN
AccessionPrimary (citable) accession number: P55418
Entry history
Integrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: July 9, 2014
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

Rhizobium plasmid pNGR234a

Rhizobium plasmid pNGR234a: entries and gene names